miRNA display CGI


Results 61 - 80 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 9450 0.68 0.57266
Target:  5'- gCGCCuucuGGUGCUGUC-UgGCCCACg-- -3'
miRNA:   3'- gGCGG----CCACGACAGcAgCGGGUGgag -5'
21505 3' -61.1 NC_004812.1 + 28193 0.68 0.58235
Target:  5'- uUCGCCGGcGCcGUCGaguaccUCGgCCugCUCg -3'
miRNA:   3'- -GGCGGCCaCGaCAGC------AGCgGGugGAG- -5'
21505 3' -61.1 NC_004812.1 + 131253 0.73 0.331997
Target:  5'- aCGCCGGcgaGCccgugGUCGcCGCCCACCg- -3'
miRNA:   3'- gGCGGCCa--CGa----CAGCaGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 121897 0.72 0.361602
Target:  5'- gCUGCCGGUGUacgagGcgcUCGUCGCCUggcucacgcacGCCUCg -3'
miRNA:   3'- -GGCGGCCACGa----C---AGCAGCGGG-----------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111815 0.72 0.401115
Target:  5'- cCCGCggaGGUGUUgGUCGUC-CCCGCCg- -3'
miRNA:   3'- -GGCGg--CCACGA-CAGCAGcGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 123065 0.71 0.417672
Target:  5'- -aGCaCGG-GCcgGUCGUCGUCgGCCUCg -3'
miRNA:   3'- ggCG-GCCaCGa-CAGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 137656 0.71 0.451997
Target:  5'- -gGCCGGUG-UGUC-UCGCUCGCUUCc -3'
miRNA:   3'- ggCGGCCACgACAGcAGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 114033 0.7 0.487807
Target:  5'- gCCGUCGGcGCgcgCGUCGCucccgacggCCACCUCc -3'
miRNA:   3'- -GGCGGCCaCGacaGCAGCG---------GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 20805 0.69 0.515518
Target:  5'- gCGCCc--GC-GUCGgCGCCCGCCUCg -3'
miRNA:   3'- gGCGGccaCGaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 36682 0.69 0.543844
Target:  5'- -aGCgCGGg---GUCGgCGCCCGCCUCg -3'
miRNA:   3'- ggCG-GCCacgaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 34887 0.66 0.727908
Target:  5'- gCGCCGGcccgggcaccUGCUcUCGcCGCCgcucCGCCUCc -3'
miRNA:   3'- gGCGGCC----------ACGAcAGCaGCGG----GUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 144680 0.66 0.718444
Target:  5'- cUCGCgGG-GCcGUCGUCGUCCGgCa- -3'
miRNA:   3'- -GGCGgCCaCGaCAGCAGCGGGUgGag -5'
21505 3' -61.1 NC_004812.1 + 57145 0.68 0.592072
Target:  5'- gCCGCCgcGGUGCUGgggcugcgCGaCGCgguccaCCGCCUCc -3'
miRNA:   3'- -GGCGG--CCACGACa-------GCaGCG------GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 106308 0.68 0.611591
Target:  5'- aCGagaaaGGUGUUGUCGggcgucUCGCCCuCCUCc -3'
miRNA:   3'- gGCgg---CCACGACAGC------AGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 118335 0.67 0.649767
Target:  5'- aCGCCGGagcaguuUGCgcgGcCGgacaaCGCCCACCUg -3'
miRNA:   3'- gGCGGCC-------ACGa--CaGCa----GCGGGUGGAg -5'
21505 3' -61.1 NC_004812.1 + 26593 0.67 0.670268
Target:  5'- aCCGCCGGcgacgUGgaGcUCGaccgCGCCUGCUUCg -3'
miRNA:   3'- -GGCGGCC-----ACgaC-AGCa---GCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 151091 0.67 0.679991
Target:  5'- cCCGCCGuGUcccuGCUGcgCGgCGCCCGgcguCCUCc -3'
miRNA:   3'- -GGCGGC-CA----CGACa-GCaGCGGGU----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 143414 0.67 0.679991
Target:  5'- aUGCUGGUGgaGU--UCGCCUACCa- -3'
miRNA:   3'- gGCGGCCACgaCAgcAGCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 105403 0.66 0.693541
Target:  5'- gCGCCGGUGCcGgcgcucggCGgggcccggcgcccgCGCCCGCC-Cg -3'
miRNA:   3'- gGCGGCCACGaCa-------GCa-------------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 121032 0.66 0.699321
Target:  5'- gCCGUCgGGUGCcccCGcCGCCC-CCUCc -3'
miRNA:   3'- -GGCGG-CCACGacaGCaGCGGGuGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.