miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 3' -61.1 NC_004812.1 + 14549 0.7 0.469727
Target:  5'- aCCGCgGGgGCggGcUCGUCGCCCGgggccugcucguCCUCg -3'
miRNA:   3'- -GGCGgCCaCGa-C-AGCAGCGGGU------------GGAG- -5'
21505 3' -61.1 NC_004812.1 + 121320 0.71 0.434638
Target:  5'- gCGCgGGUGCUGcccacccggcUCGUgGCCUACCc- -3'
miRNA:   3'- gGCGgCCACGAC----------AGCAgCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 17078 0.66 0.689678
Target:  5'- gCGCCccccguGGcGCUGUCccCGCCCcCCUCu -3'
miRNA:   3'- gGCGG------CCaCGACAGcaGCGGGuGGAG- -5'
21505 3' -61.1 NC_004812.1 + 105403 0.66 0.693541
Target:  5'- gCGCCGGUGCcGgcgcucggCGgggcccggcgcccgCGCCCGCC-Cg -3'
miRNA:   3'- gGCGGCCACGaCa-------GCa-------------GCGGGUGGaG- -5'
21505 3' -61.1 NC_004812.1 + 140644 0.68 0.58235
Target:  5'- gCCGCCGGccGCggggcGUCcgGUCGCCCgGCCg- -3'
miRNA:   3'- -GGCGGCCa-CGa----CAG--CAGCGGG-UGGag -5'
21505 3' -61.1 NC_004812.1 + 42385 0.67 0.650745
Target:  5'- gUCGCCGGUGUUccccgcccucGUCGgcaUCGUCCggggucACCUCc -3'
miRNA:   3'- -GGCGGCCACGA----------CAGC---AGCGGG------UGGAG- -5'
21505 3' -61.1 NC_004812.1 + 131362 0.67 0.638022
Target:  5'- aCCGCgGcUGCcGUCuacacgaucgcgcgGUCGCCgGCCUCa -3'
miRNA:   3'- -GGCGgCcACGaCAG--------------CAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 61523 0.69 0.543844
Target:  5'- aCCGCCcucGGggGUUGUCGUUGCCUAgCa- -3'
miRNA:   3'- -GGCGG---CCa-CGACAGCAGCGGGUgGag -5'
21505 3' -61.1 NC_004812.1 + 99927 0.67 0.650745
Target:  5'- gCCGCCGaagaUGCgcGUCGacgccgCGCCCGCgUCg -3'
miRNA:   3'- -GGCGGCc---ACGa-CAGCa-----GCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 37108 0.67 0.660517
Target:  5'- gCCGUcgaggCGGUGUUGgcgcccgCGUCGgCCGCCg- -3'
miRNA:   3'- -GGCG-----GCCACGACa------GCAGCgGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 5781 0.69 0.543844
Target:  5'- -aGCgCGGg---GUCGgCGCCCGCCUCg -3'
miRNA:   3'- ggCG-GCCacgaCAGCaGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 60011 0.69 0.534341
Target:  5'- uCCGCgGG-GCcGgCGUCGUCgACCUCg -3'
miRNA:   3'- -GGCGgCCaCGaCaGCAGCGGgUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 111201 0.69 0.528668
Target:  5'- -gGCUGGUGCUcggcugguacGUCGUguucggggcgaacccCGCCCACCg- -3'
miRNA:   3'- ggCGGCCACGA----------CAGCA---------------GCGGGUGGag -5'
21505 3' -61.1 NC_004812.1 + 102016 0.67 0.670268
Target:  5'- gCGCCGccGCgaggGUgGcUCGUCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGa---CAgC-AGCGGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 129139 0.67 0.670268
Target:  5'- gCGCCGGcggGCgcgcggCGcCGCCCGCgUCu -3'
miRNA:   3'- gGCGGCCa--CGaca---GCaGCGGGUGgAG- -5'
21505 3' -61.1 NC_004812.1 + 7300 0.67 0.660517
Target:  5'- gCCGCCuGUcGCc--CGUCGCCCGgcCCUCu -3'
miRNA:   3'- -GGCGGcCA-CGacaGCAGCGGGU--GGAG- -5'
21505 3' -61.1 NC_004812.1 + 95499 0.67 0.660517
Target:  5'- gCGCCGGcGCgccgCGggGCgCCGCCUCg -3'
miRNA:   3'- gGCGGCCaCGaca-GCagCG-GGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 79061 0.67 0.660517
Target:  5'- gCgGCCGGacGCguuUGcUCGUCGCCCcccgauCCUCg -3'
miRNA:   3'- -GgCGGCCa-CG---AC-AGCAGCGGGu-----GGAG- -5'
21505 3' -61.1 NC_004812.1 + 2556 0.71 0.417672
Target:  5'- aCGCCGccGCcGUCGUCGacgacgacCCCGCCUCc -3'
miRNA:   3'- gGCGGCcaCGaCAGCAGC--------GGGUGGAG- -5'
21505 3' -61.1 NC_004812.1 + 119285 0.71 0.417672
Target:  5'- cCCGCCGGgcggGCUGUaCGgcgCGCCgUACCcCg -3'
miRNA:   3'- -GGCGGCCa---CGACA-GCa--GCGG-GUGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.