miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21505 5' -55 NC_004812.1 + 82025 0.65 0.953693
Target:  5'- aCGGcGGGGGGGACgCCGUCgggcgcCGGAa -3'
miRNA:   3'- aGCUcCUCCUCUUGgGGUAGau----GCCU- -5'
21505 5' -55 NC_004812.1 + 93151 0.65 0.953693
Target:  5'- gCGAGgGAGGAGGgcgccGCCCCGagcACGGc -3'
miRNA:   3'- aGCUC-CUCCUCU-----UGGGGUagaUGCCu -5'
21505 5' -55 NC_004812.1 + 146363 0.66 0.949628
Target:  5'- gUUGAGGAGcAGcACCCCG-CcGCGGGc -3'
miRNA:   3'- -AGCUCCUCcUCuUGGGGUaGaUGCCU- -5'
21505 5' -55 NC_004812.1 + 145387 0.66 0.949628
Target:  5'- aCGGcGGGGGAGAugCguCCGUCggaGGAg -3'
miRNA:   3'- aGCU-CCUCCUCUugG--GGUAGaugCCU- -5'
21505 5' -55 NC_004812.1 + 59070 0.66 0.949628
Target:  5'- -aGAGGAcgaaGGucacGAACCCCcccgggCUGCGGGg -3'
miRNA:   3'- agCUCCU----CCu---CUUGGGGua----GAUGCCU- -5'
21505 5' -55 NC_004812.1 + 155388 0.66 0.949628
Target:  5'- gCGGGGAGGA--GCCCCcgCgGCGc- -3'
miRNA:   3'- aGCUCCUCCUcuUGGGGuaGaUGCcu -5'
21505 5' -55 NC_004812.1 + 152552 0.66 0.949628
Target:  5'- -gGAGGAGGAGcGGCCUgCggCggagGCGGAg -3'
miRNA:   3'- agCUCCUCCUC-UUGGG-GuaGa---UGCCU- -5'
21505 5' -55 NC_004812.1 + 121651 0.66 0.949628
Target:  5'- -gGAGGAGGAGcGGCCUgCggCggagGCGGAg -3'
miRNA:   3'- agCUCCUCCUC-UUGGG-GuaGa---UGCCU- -5'
21505 5' -55 NC_004812.1 + 124487 0.66 0.949628
Target:  5'- gCGGGGAGGA--GCCCCcgCgGCGc- -3'
miRNA:   3'- aGCUCCUCCUcuUGGGGuaGaUGCcu -5'
21505 5' -55 NC_004812.1 + 107846 0.66 0.949628
Target:  5'- cUCGcGGAGGcGGGGCUCCGccUCcgaggGCGGAg -3'
miRNA:   3'- -AGCuCCUCC-UCUUGGGGU--AGa----UGCCU- -5'
21505 5' -55 NC_004812.1 + 27914 0.66 0.949628
Target:  5'- gUCGGGGAGaccGGGcGCCCCGcCUccCGGAg -3'
miRNA:   3'- -AGCUCCUC---CUCuUGGGGUaGAu-GCCU- -5'
21505 5' -55 NC_004812.1 + 81454 0.66 0.947078
Target:  5'- gCGAGGccGAGAGCCUCGccaaccugaagacgcUCcUGCGGGu -3'
miRNA:   3'- aGCUCCucCUCUUGGGGU---------------AG-AUGCCU- -5'
21505 5' -55 NC_004812.1 + 104080 0.66 0.945331
Target:  5'- aCGGGGGGGcGAGuCCCCAUCg----- -3'
miRNA:   3'- aGCUCCUCCuCUU-GGGGUAGaugccu -5'
21505 5' -55 NC_004812.1 + 4635 0.66 0.940801
Target:  5'- gCGGGGGGGcGGGACgCCcgC-GCGGGg -3'
miRNA:   3'- aGCUCCUCC-UCUUGgGGuaGaUGCCU- -5'
21505 5' -55 NC_004812.1 + 5656 0.66 0.940801
Target:  5'- cCGGGcgcGAGGGGAGCCCgCAggggC-ACGGGg -3'
miRNA:   3'- aGCUC---CUCCUCUUGGG-GUa---GaUGCCU- -5'
21505 5' -55 NC_004812.1 + 35536 0.66 0.940801
Target:  5'- gCGGGGGGGcGGGACgCCcgC-GCGGGg -3'
miRNA:   3'- aGCUCCUCC-UCUUGgGGuaGaUGCCU- -5'
21505 5' -55 NC_004812.1 + 125175 0.66 0.940801
Target:  5'- -gGAGGcGGGAGGGCCCgGgcgcGCGGGc -3'
miRNA:   3'- agCUCC-UCCUCUUGGGgUaga-UGCCU- -5'
21505 5' -55 NC_004812.1 + 110777 0.66 0.940801
Target:  5'- uUCGAGGAGGuuccgGGAGCCgCuCGUCgggcuccCGGGc -3'
miRNA:   3'- -AGCUCCUCC-----UCUUGG-G-GUAGau-----GCCU- -5'
21505 5' -55 NC_004812.1 + 36557 0.66 0.940801
Target:  5'- cCGGGcgcGAGGGGAGCCCgCAggggC-ACGGGg -3'
miRNA:   3'- aGCUC---CUCCUCUUGGG-GUa---GaUGCCU- -5'
21505 5' -55 NC_004812.1 + 156076 0.66 0.940801
Target:  5'- -gGAGGcGGGAGGGCCCgGgcgcGCGGGc -3'
miRNA:   3'- agCUCC-UCCUCUUGGGgUaga-UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.