Results 1 - 20 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21505 | 5' | -55 | NC_004812.1 | + | 82025 | 0.65 | 0.953693 |
Target: 5'- aCGGcGGGGGGGACgCCGUCgggcgcCGGAa -3' miRNA: 3'- aGCUcCUCCUCUUGgGGUAGau----GCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 93151 | 0.65 | 0.953693 |
Target: 5'- gCGAGgGAGGAGGgcgccGCCCCGagcACGGc -3' miRNA: 3'- aGCUC-CUCCUCU-----UGGGGUagaUGCCu -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 36557 | 0.66 | 0.940801 |
Target: 5'- cCGGGcgcGAGGGGAGCCCgCAggggC-ACGGGg -3' miRNA: 3'- aGCUC---CUCCUCUUGGG-GUa---GaUGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 110777 | 0.66 | 0.940801 |
Target: 5'- uUCGAGGAGGuuccgGGAGCCgCuCGUCgggcuccCGGGc -3' miRNA: 3'- -AGCUCCUCC-----UCUUGG-G-GUAGau-----GCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 152552 | 0.66 | 0.949628 |
Target: 5'- -gGAGGAGGAGcGGCCUgCggCggagGCGGAg -3' miRNA: 3'- agCUCCUCCUC-UUGGG-GuaGa---UGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 68099 | 0.66 | 0.936036 |
Target: 5'- -gGAGGccAGGucGAGCCCCAUCUugaGGc -3' miRNA: 3'- agCUCC--UCCu-CUUGGGGUAGAug-CCu -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 119301 | 0.66 | 0.936036 |
Target: 5'- cCGGcGAGGAGuGCCCCAcggaUCcggcgACGGAc -3' miRNA: 3'- aGCUcCUCCUCuUGGGGU----AGa----UGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 69011 | 0.66 | 0.931033 |
Target: 5'- gCGGGGcGGGGAgugcgaggccggGCCCUAUCUGCc-- -3' miRNA: 3'- aGCUCCuCCUCU------------UGGGGUAGAUGccu -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 24063 | 0.66 | 0.936036 |
Target: 5'- cCGGccGGucGAGGAgCCCAUCUACGa- -3' miRNA: 3'- aGCU--CCucCUCUUgGGGUAGAUGCcu -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 24492 | 0.66 | 0.936036 |
Target: 5'- cCGcuccuGGAcGGGGGGCCCCcgCgccGCGGGg -3' miRNA: 3'- aGCu----CCU-CCUCUUGGGGuaGa--UGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 35536 | 0.66 | 0.940801 |
Target: 5'- gCGGGGGGGcGGGACgCCcgC-GCGGGg -3' miRNA: 3'- aGCUCCUCC-UCUUGgGGuaGaUGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 72345 | 0.66 | 0.939397 |
Target: 5'- gCGGGGGGGAGGGggggcggggggucuCCCgCGUCguCGGAc -3' miRNA: 3'- aGCUCCUCCUCUU--------------GGG-GUAGauGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 4635 | 0.66 | 0.940801 |
Target: 5'- gCGGGGGGGcGGGACgCCcgC-GCGGGg -3' miRNA: 3'- aGCUCCUCC-UCUUGgGGuaGaUGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 104080 | 0.66 | 0.945331 |
Target: 5'- aCGGGGGGGcGAGuCCCCAUCg----- -3' miRNA: 3'- aGCUCCUCCuCUU-GGGGUAGaugccu -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 5656 | 0.66 | 0.940801 |
Target: 5'- cCGGGcgcGAGGGGAGCCCgCAggggC-ACGGGg -3' miRNA: 3'- aGCUC---CUCCUCUUGGG-GUa---GaUGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 125175 | 0.66 | 0.940801 |
Target: 5'- -gGAGGcGGGAGGGCCCgGgcgcGCGGGc -3' miRNA: 3'- agCUCC-UCCUCUUGGGgUaga-UGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 124487 | 0.66 | 0.949628 |
Target: 5'- gCGGGGAGGA--GCCCCcgCgGCGc- -3' miRNA: 3'- aGCUCCUCCUcuUGGGGuaGaUGCcu -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 121651 | 0.66 | 0.949628 |
Target: 5'- -gGAGGAGGAGcGGCCUgCggCggagGCGGAg -3' miRNA: 3'- agCUCCUCCUC-UUGGG-GuaGa---UGCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 27914 | 0.66 | 0.949628 |
Target: 5'- gUCGGGGAGaccGGGcGCCCCGcCUccCGGAg -3' miRNA: 3'- -AGCUCCUC---CUCuUGGGGUaGAu-GCCU- -5' |
|||||||
21505 | 5' | -55 | NC_004812.1 | + | 107846 | 0.66 | 0.949628 |
Target: 5'- cUCGcGGAGGcGGGGCUCCGccUCcgaggGCGGAg -3' miRNA: 3'- -AGCuCCUCC-UCUUGGGGU--AGa----UGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home