miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21508 5' -58.8 NC_004812.1 + 56977 0.66 0.800887
Target:  5'- gCGGCcgaUCCgGGGGUCGCagCGCCUGa- -3'
miRNA:   3'- -GUCGa--GGGaCCCUAGCGa-GCGGAUga -5'
21508 5' -58.8 NC_004812.1 + 17564 0.66 0.79199
Target:  5'- uGGCguauaaCCCgcagGGGGUC-CUCGCCgccgGCUg -3'
miRNA:   3'- gUCGa-----GGGa---CCCUAGcGAGCGGa---UGA- -5'
21508 5' -58.8 NC_004812.1 + 64444 0.66 0.79199
Target:  5'- uCAGCaUCCUgcugcGGGAcUgGCUCGCCaUGCg -3'
miRNA:   3'- -GUCG-AGGGa----CCCU-AgCGAGCGG-AUGa -5'
21508 5' -58.8 NC_004812.1 + 103741 0.66 0.782952
Target:  5'- -cGCUCCCgUGGGcgCGgaUGUCUAUg -3'
miRNA:   3'- guCGAGGG-ACCCuaGCgaGCGGAUGa -5'
21508 5' -58.8 NC_004812.1 + 111327 0.66 0.773783
Target:  5'- -uGUUCCUgucggGGGGUCGCcCGCCcGCc -3'
miRNA:   3'- guCGAGGGa----CCCUAGCGaGCGGaUGa -5'
21508 5' -58.8 NC_004812.1 + 81682 0.66 0.773783
Target:  5'- aCGGCUCCCcc-GAcccgcUCGCgCGCCUGCa -3'
miRNA:   3'- -GUCGAGGGaccCU-----AGCGaGCGGAUGa -5'
21508 5' -58.8 NC_004812.1 + 79664 0.66 0.773783
Target:  5'- aAGCUCCa-GGGggUGCUgCGCCcGCUc -3'
miRNA:   3'- gUCGAGGgaCCCuaGCGA-GCGGaUGA- -5'
21508 5' -58.8 NC_004812.1 + 81405 0.67 0.755083
Target:  5'- aCGGCcgCCCUgcGGGAggCGCUCGCg-GCa -3'
miRNA:   3'- -GUCGa-GGGA--CCCUa-GCGAGCGgaUGa -5'
21508 5' -58.8 NC_004812.1 + 89382 0.67 0.755083
Target:  5'- gCGGCUCCCUcgagaggaGGGAgccCGCgggCGCCg--- -3'
miRNA:   3'- -GUCGAGGGA--------CCCUa--GCGa--GCGGauga -5'
21508 5' -58.8 NC_004812.1 + 91615 0.67 0.73596
Target:  5'- gGGgaCCCgggggGGGAgcuguccaugUCGCUCGCCUcCUc -3'
miRNA:   3'- gUCgaGGGa----CCCU----------AGCGAGCGGAuGA- -5'
21508 5' -58.8 NC_004812.1 + 41474 0.67 0.73596
Target:  5'- gGGCcgCCCUcgucaGGGAgucgUCGCgccgUGCCUGCUg -3'
miRNA:   3'- gUCGa-GGGA-----CCCU----AGCGa---GCGGAUGA- -5'
21508 5' -58.8 NC_004812.1 + 126734 0.67 0.726262
Target:  5'- cCGGC-CCCcGGGGUCcuggcggacgGCUUGUCUGCg -3'
miRNA:   3'- -GUCGaGGGaCCCUAG----------CGAGCGGAUGa -5'
21508 5' -58.8 NC_004812.1 + 94450 0.67 0.713538
Target:  5'- cCGGCcgcucuuccucguuUCCCUGGGcgCcCUCGCCgGCg -3'
miRNA:   3'- -GUCG--------------AGGGACCCuaGcGAGCGGaUGa -5'
21508 5' -58.8 NC_004812.1 + 103531 0.67 0.706639
Target:  5'- gCAGgUCCCUGGGGcggcccuugagCGC-CGCCUGg- -3'
miRNA:   3'- -GUCgAGGGACCCUa----------GCGaGCGGAUga -5'
21508 5' -58.8 NC_004812.1 + 141236 0.68 0.69673
Target:  5'- cCAGgUCCCUGGGGagggcguggUCGCUaaggaaCGCCUccaggcGCUg -3'
miRNA:   3'- -GUCgAGGGACCCU---------AGCGA------GCGGA------UGA- -5'
21508 5' -58.8 NC_004812.1 + 52906 0.68 0.69673
Target:  5'- -cGCUCCCggcgcgccGGGAggaccUGCcCGCCUACUg -3'
miRNA:   3'- guCGAGGGa-------CCCUa----GCGaGCGGAUGA- -5'
21508 5' -58.8 NC_004812.1 + 113388 0.68 0.686769
Target:  5'- cCGGgUCuCCUGGGAgaCGCUgGCgCUGCa -3'
miRNA:   3'- -GUCgAG-GGACCCUa-GCGAgCG-GAUGa -5'
21508 5' -58.8 NC_004812.1 + 41876 0.68 0.656655
Target:  5'- cCGGCUCCC-GGcGUCGCUggagCGCCUGg- -3'
miRNA:   3'- -GUCGAGGGaCCcUAGCGA----GCGGAUga -5'
21508 5' -58.8 NC_004812.1 + 54643 0.69 0.596118
Target:  5'- gGGCUCaCCacgGGGGUCGC-CGCC-GCg -3'
miRNA:   3'- gUCGAG-GGa--CCCUAGCGaGCGGaUGa -5'
21508 5' -58.8 NC_004812.1 + 71535 0.69 0.586077
Target:  5'- gCGGcCUCCCUGGcGUCGUaCGCCgggGCg -3'
miRNA:   3'- -GUC-GAGGGACCcUAGCGaGCGGa--UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.