miRNA display CGI


Results 1 - 20 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21509 3' -61 NC_004812.1 + 138767 0.66 0.721002
Target:  5'- cUCUGUGGcGCUCGaucCCGGCCGCCugGGUcgUGg -3'
miRNA:   3'- -AGGCGCU-CGAGU---GGCUGGCGG--UCG--AC- -5'
21509 3' -61 NC_004812.1 + 128077 0.66 0.721002
Target:  5'- gUCGgGccGCUCGCUG-CCGCCggGGCUGg -3'
miRNA:   3'- aGGCgCu-CGAGUGGCuGGCGG--UCGAC- -5'
21509 3' -61 NC_004812.1 + 125579 0.66 0.721002
Target:  5'- cUCUGCcugGGGUUCA---ACCGCCGGCUGc -3'
miRNA:   3'- -AGGCG---CUCGAGUggcUGGCGGUCGAC- -5'
21509 3' -61 NC_004812.1 + 103237 0.66 0.721002
Target:  5'- cUCCGCGAGCagGagCGGCgGCCgGGCg- -3'
miRNA:   3'- -AGGCGCUCGagUg-GCUGgCGG-UCGac -5'
21509 3' -61 NC_004812.1 + 148407 0.66 0.721002
Target:  5'- -aCGCGGGCcC-CCGGCCGCUcucGGCc- -3'
miRNA:   3'- agGCGCUCGaGuGGCUGGCGG---UCGac -5'
21509 3' -61 NC_004812.1 + 16179 0.66 0.721002
Target:  5'- aCUGgGGGCgc-UCGAUCGCCAGCa- -3'
miRNA:   3'- aGGCgCUCGaguGGCUGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 94839 0.66 0.721002
Target:  5'- cCUG-GGGCaCGCCG-CCGCCGGaCUGa -3'
miRNA:   3'- aGGCgCUCGaGUGGCuGGCGGUC-GAC- -5'
21509 3' -61 NC_004812.1 + 60847 0.66 0.721002
Target:  5'- cUCCaCGGGCUCgguguGCgCGGCCGCCgcgAGCg- -3'
miRNA:   3'- -AGGcGCUCGAG-----UG-GCUGGCGG---UCGac -5'
21509 3' -61 NC_004812.1 + 26854 0.66 0.721002
Target:  5'- gCCGCG-GCgggCGCCGccGCCGCC-GCc- -3'
miRNA:   3'- aGGCGCuCGa--GUGGC--UGGCGGuCGac -5'
21509 3' -61 NC_004812.1 + 152362 0.66 0.721002
Target:  5'- gCCGCG-GCgggCGCCGccGCCGCC-GCc- -3'
miRNA:   3'- aGGCGCuCGa--GUGGC--UGGCGGuCGac -5'
21509 3' -61 NC_004812.1 + 81226 0.66 0.721002
Target:  5'- gUCCgaGCGAGgaCGCCcuGGCCGCguGCg- -3'
miRNA:   3'- -AGG--CGCUCgaGUGG--CUGGCGguCGac -5'
21509 3' -61 NC_004812.1 + 97762 0.66 0.721002
Target:  5'- aCCGCGuGgUCuuuGCCGG-CGCCGGCg- -3'
miRNA:   3'- aGGCGCuCgAG---UGGCUgGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 117506 0.66 0.721002
Target:  5'- -aCGCGGGCcC-CCGGCCGCUcucGGCc- -3'
miRNA:   3'- agGCGCUCGaGuGGCUGGCGG---UCGac -5'
21509 3' -61 NC_004812.1 + 136579 0.66 0.711389
Target:  5'- aCCGgGAcGCUCGCCG-CCuCUAcGCUGg -3'
miRNA:   3'- aGGCgCU-CGAGUGGCuGGcGGU-CGAC- -5'
21509 3' -61 NC_004812.1 + 130909 0.66 0.711389
Target:  5'- gCCGgGGGCgUCGCCGGCC-CC-GCg- -3'
miRNA:   3'- aGGCgCUCG-AGUGGCUGGcGGuCGac -5'
21509 3' -61 NC_004812.1 + 94221 0.66 0.711389
Target:  5'- gUCUGCuc-CUCGCCGGCguCGCCGGcCUGg -3'
miRNA:   3'- -AGGCGcucGAGUGGCUG--GCGGUC-GAC- -5'
21509 3' -61 NC_004812.1 + 22649 0.66 0.711389
Target:  5'- cCCGgGGGCUC-CCGcguGCCcgggGCCGGCg- -3'
miRNA:   3'- aGGCgCUCGAGuGGC---UGG----CGGUCGac -5'
21509 3' -61 NC_004812.1 + 279 0.66 0.711389
Target:  5'- cCCGCGcgcGCUcCGCCG-CCGuCCGGCc- -3'
miRNA:   3'- aGGCGCu--CGA-GUGGCuGGC-GGUCGac -5'
21509 3' -61 NC_004812.1 + 46832 0.66 0.711389
Target:  5'- gUCUGCGGGCcC-CCGAgcguCUGCCAGUa- -3'
miRNA:   3'- -AGGCGCUCGaGuGGCU----GGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 47701 0.66 0.711389
Target:  5'- gCCGCGGGCcC-CCGGgCGUacuGGCUGg -3'
miRNA:   3'- aGGCGCUCGaGuGGCUgGCGg--UCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.