miRNA display CGI


Results 1 - 20 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21509 3' -61 NC_004812.1 + 55185 1.07 0.001415
Target:  5'- cUCCGCGAGCUCACCGACCGCCAGCUGc -3'
miRNA:   3'- -AGGCGCUCGAGUGGCUGGCGGUCGAC- -5'
21509 3' -61 NC_004812.1 + 26938 0.8 0.104567
Target:  5'- gCCGCGGGCUCAUCG-CCGCgCAGCg- -3'
miRNA:   3'- aGGCGCUCGAGUGGCuGGCG-GUCGac -5'
21509 3' -61 NC_004812.1 + 65082 0.8 0.107259
Target:  5'- -aCGCGGGCUCGcguccgcaggccCCGGCCGCCGGCUc -3'
miRNA:   3'- agGCGCUCGAGU------------GGCUGGCGGUCGAc -5'
21509 3' -61 NC_004812.1 + 44900 0.8 0.121719
Target:  5'- -aCGCGAGCUCGCCguggcccaGAUCGCCAGCg- -3'
miRNA:   3'- agGCGCUCGAGUGG--------CUGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 131255 0.79 0.137974
Target:  5'- gCCgGCGAGCccguggUCGCCGcccACCGCCGGCUGg -3'
miRNA:   3'- aGG-CGCUCG------AGUGGC---UGGCGGUCGAC- -5'
21509 3' -61 NC_004812.1 + 97841 0.77 0.189909
Target:  5'- aCCGCGcccucGCUCGCCGggcGCCGCCGGCc- -3'
miRNA:   3'- aGGCGCu----CGAGUGGC---UGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 154128 0.76 0.194547
Target:  5'- cCCGCGAgGC-CGCCG-CCGCCGGCg- -3'
miRNA:   3'- aGGCGCU-CGaGUGGCuGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 28620 0.76 0.194547
Target:  5'- cCCGCGAgGC-CGCCG-CCGCCGGCg- -3'
miRNA:   3'- aGGCGCU-CGaGUGGCuGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 43373 0.76 0.194547
Target:  5'- cCCGCGAGCg-GCCcACCgGCCAGCUGc -3'
miRNA:   3'- aGGCGCUCGagUGGcUGG-CGGUCGAC- -5'
21509 3' -61 NC_004812.1 + 77091 0.76 0.204119
Target:  5'- gUCCGUGAGCUUGgCGGCCGCCAugGCc- -3'
miRNA:   3'- -AGGCGCUCGAGUgGCUGGCGGU--CGac -5'
21509 3' -61 NC_004812.1 + 452 0.76 0.209057
Target:  5'- gCCGCGAGC-C-CgGGCCGCCGGCg- -3'
miRNA:   3'- aGGCGCUCGaGuGgCUGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 31353 0.76 0.209057
Target:  5'- gCCGCGAGC-C-CgGGCCGCCGGCg- -3'
miRNA:   3'- aGGCGCUCGaGuGgCUGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 35552 0.76 0.214098
Target:  5'- cCCGCGcggggaggGGCUCGCCGGCCGUCGcGCg- -3'
miRNA:   3'- aGGCGC--------UCGAGUGGCUGGCGGU-CGac -5'
21509 3' -61 NC_004812.1 + 4651 0.76 0.214098
Target:  5'- cCCGCGcggggaggGGCUCGCCGGCCGUCGcGCg- -3'
miRNA:   3'- aGGCGC--------UCGAGUGGCUGGCGGU-CGac -5'
21509 3' -61 NC_004812.1 + 96484 0.76 0.219242
Target:  5'- cCCGCgGAGgaCGCCG-CCGCCAGCg- -3'
miRNA:   3'- aGGCG-CUCgaGUGGCuGGCGGUCGac -5'
21509 3' -61 NC_004812.1 + 90190 0.75 0.235311
Target:  5'- gUCCGCuucagCGCCGACCGCCuGCUGg -3'
miRNA:   3'- -AGGCGcucgaGUGGCUGGCGGuCGAC- -5'
21509 3' -61 NC_004812.1 + 109475 0.75 0.252356
Target:  5'- cCCGCGGGCUgcggCAUCGugCGgCGGCUGc -3'
miRNA:   3'- aGGCGCUCGA----GUGGCugGCgGUCGAC- -5'
21509 3' -61 NC_004812.1 + 105213 0.75 0.252356
Target:  5'- --gGCGAGCgCGCCGGCgGCCGGCg- -3'
miRNA:   3'- aggCGCUCGaGUGGCUGgCGGUCGac -5'
21509 3' -61 NC_004812.1 + 137740 0.74 0.25826
Target:  5'- cCCGCGGGC-CGCCGACCcCCGggacccGCUGg -3'
miRNA:   3'- aGGCGCUCGaGUGGCUGGcGGU------CGAC- -5'
21509 3' -61 NC_004812.1 + 1339 0.74 0.264276
Target:  5'- gUCCGCGGGCggucCGCCGGaagGCCGGCUa -3'
miRNA:   3'- -AGGCGCUCGa---GUGGCUgg-CGGUCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.