miRNA display CGI


Results 1 - 20 of 268 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21509 5' -53.9 NC_004812.1 + 109788 0.66 0.976431
Target:  5'- cCCCUcgACCGgGCCGaCGGCcgCCggGCa -3'
miRNA:   3'- -GGGA--UGGUgCGGCaGUUGaaGGagCG- -5'
21509 5' -53.9 NC_004812.1 + 9122 0.66 0.976431
Target:  5'- cCCCUcGCCGC-CCGUCGAgUacguuaUCCggagcgUCGCg -3'
miRNA:   3'- -GGGA-UGGUGcGGCAGUUgA------AGG------AGCG- -5'
21509 5' -53.9 NC_004812.1 + 43006 0.66 0.976431
Target:  5'- cUCCaggACCGCGCCGgaagucgCGACgauggggUCCUggggcCGCa -3'
miRNA:   3'- -GGGa--UGGUGCGGCa------GUUGa------AGGA-----GCG- -5'
21509 5' -53.9 NC_004812.1 + 21273 0.66 0.976431
Target:  5'- ---cGCCACGCCcUCGAUguagugacaUCCUCGUc -3'
miRNA:   3'- gggaUGGUGCGGcAGUUGa--------AGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 102838 0.66 0.976431
Target:  5'- gCCU-CCACGCCGgCGACg----CGCa -3'
miRNA:   3'- gGGAuGGUGCGGCaGUUGaaggaGCG- -5'
21509 5' -53.9 NC_004812.1 + 80921 0.66 0.976431
Target:  5'- gCCCU-CCGCGgaGUCGggcgggggGCcgUCCUCGUc -3'
miRNA:   3'- -GGGAuGGUGCggCAGU--------UGa-AGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 1664 0.66 0.976431
Target:  5'- cCCCguugGCCgcgGCGCCG-CGGCccgCC-CGCg -3'
miRNA:   3'- -GGGa---UGG---UGCGGCaGUUGaa-GGaGCG- -5'
21509 5' -53.9 NC_004812.1 + 32565 0.66 0.976431
Target:  5'- cCCCguugGCCgcgGCGCCG-CGGCccgCC-CGCg -3'
miRNA:   3'- -GGGa---UGG---UGCGGCaGUUGaa-GGaGCG- -5'
21509 5' -53.9 NC_004812.1 + 81018 0.66 0.976185
Target:  5'- uCCCUGCgGCacuacguGCCGUU--CUUCCgcCGCg -3'
miRNA:   3'- -GGGAUGgUG-------CGGCAGuuGAAGGa-GCG- -5'
21509 5' -53.9 NC_004812.1 + 116936 0.66 0.976185
Target:  5'- -aCUGCaaCACGCUGUCGcuggugcGCUUCCUggaGCu -3'
miRNA:   3'- ggGAUG--GUGCGGCAGU-------UGAAGGAg--CG- -5'
21509 5' -53.9 NC_004812.1 + 35063 0.66 0.973885
Target:  5'- gCCgcgcGCCACcaGCCGcgCGACgaUCUCGCg -3'
miRNA:   3'- gGGa---UGGUG--CGGCa-GUUGaaGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 76143 0.66 0.973885
Target:  5'- gCC-GCCGCGUCGccgCGACcaCCUUGCc -3'
miRNA:   3'- gGGaUGGUGCGGCa--GUUGaaGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 114736 0.66 0.973885
Target:  5'- aCCaCUGCCACuGCCG-CAGCccgUUCUCcCg -3'
miRNA:   3'- -GG-GAUGGUG-CGGCaGUUGa--AGGAGcG- -5'
21509 5' -53.9 NC_004812.1 + 83801 0.66 0.973885
Target:  5'- cCCCgUGCCugGUgcuCGUCGACaucUCCaUGCg -3'
miRNA:   3'- -GGG-AUGGugCG---GCAGUUGa--AGGaGCG- -5'
21509 5' -53.9 NC_004812.1 + 58017 0.66 0.973885
Target:  5'- gCCCUcggcgAUgAUGCCGcgCAGCUg-CUCGCa -3'
miRNA:   3'- -GGGA-----UGgUGCGGCa-GUUGAagGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 8441 0.66 0.973885
Target:  5'- aCCCUuccgcucccaccGCCGCGUCGUCcugaggAACgcCCcCGCg -3'
miRNA:   3'- -GGGA------------UGGUGCGGCAG------UUGaaGGaGCG- -5'
21509 5' -53.9 NC_004812.1 + 44010 0.66 0.973885
Target:  5'- cUCCUcggaGCCggggGCGUCGUCcGCgUCCUCGa -3'
miRNA:   3'- -GGGA----UGG----UGCGGCAGuUGaAGGAGCg -5'
21509 5' -53.9 NC_004812.1 + 38958 0.66 0.973885
Target:  5'- cCCCguagGCCACGggcaCGUCGGCcUCCgugUCGg -3'
miRNA:   3'- -GGGa---UGGUGCg---GCAGUUGaAGG---AGCg -5'
21509 5' -53.9 NC_004812.1 + 122692 0.66 0.973885
Target:  5'- uCgCUGuCCGCGUcauCGUC-GCUgUCCUCGCu -3'
miRNA:   3'- -GgGAU-GGUGCG---GCAGuUGA-AGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 153593 0.66 0.973885
Target:  5'- uCgCUGuCCGCGUcauCGUC-GCUgUCCUCGCu -3'
miRNA:   3'- -GgGAU-GGUGCG---GCAGuUGA-AGGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.