miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21509 5' -53.9 NC_004812.1 + 154190 0.66 0.965057
Target:  5'- gCCUGCgCGCGCUGggGGCUggCCgCGCc -3'
miRNA:   3'- gGGAUG-GUGCGGCagUUGAa-GGaGCG- -5'
21509 5' -53.9 NC_004812.1 + 76043 0.66 0.968204
Target:  5'- gCCU-CCACGUCGgCGGCccagCgCUCGCg -3'
miRNA:   3'- gGGAuGGUGCGGCaGUUGaa--G-GAGCG- -5'
21509 5' -53.9 NC_004812.1 + 55743 0.66 0.968204
Target:  5'- gCCCUcCCcCGCCucccccgCGGCcccgUCCUCGCc -3'
miRNA:   3'- -GGGAuGGuGCGGca-----GUUGa---AGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 62275 0.66 0.967592
Target:  5'- cCCCgcgcagGCCGCGCCGcacaccuacugcagCGagugcgaugaguuucGCUUCgUCGCg -3'
miRNA:   3'- -GGGa-----UGGUGCGGCa-------------GU---------------UGAAGgAGCG- -5'
21509 5' -53.9 NC_004812.1 + 103623 0.66 0.965057
Target:  5'- gCCaGCaCGCGgCGgUAGCUcUCCUCGCg -3'
miRNA:   3'- gGGaUG-GUGCgGCaGUUGA-AGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 57059 0.66 0.968204
Target:  5'- uUCUGCCGgGCCGcggUCGGCU-CCgacacCGCg -3'
miRNA:   3'- gGGAUGGUgCGGC---AGUUGAaGGa----GCG- -5'
21509 5' -53.9 NC_004812.1 + 154127 0.66 0.961698
Target:  5'- nCCCgcgagGCCGcCGCCGcCGgcgccccggACUUCCgcCGCg -3'
miRNA:   3'- -GGGa----UGGU-GCGGCaGU---------UGAAGGa-GCG- -5'
21509 5' -53.9 NC_004812.1 + 98343 0.66 0.965057
Target:  5'- gCCgACCG-GCCGUCG---UCCUCGUc -3'
miRNA:   3'- gGGaUGGUgCGGCAGUugaAGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 120199 0.66 0.965057
Target:  5'- uCCCUGCUGCGCgGcgccCGGCgUCCUCc- -3'
miRNA:   3'- -GGGAUGGUGCGgCa---GUUGaAGGAGcg -5'
21509 5' -53.9 NC_004812.1 + 48769 0.66 0.965057
Target:  5'- gCCUGCUggaGCGCCugccCcGCUaCCUCGCg -3'
miRNA:   3'- gGGAUGG---UGCGGca--GuUGAaGGAGCG- -5'
21509 5' -53.9 NC_004812.1 + 21020 0.66 0.968204
Target:  5'- gCCCcACCGgGCCGUUGAgg-CCgCGCa -3'
miRNA:   3'- -GGGaUGGUgCGGCAGUUgaaGGaGCG- -5'
21509 5' -53.9 NC_004812.1 + 74269 0.66 0.961698
Target:  5'- cCCCgGCCGCGCacCGUCcGCgggUCCggcucauggCGCu -3'
miRNA:   3'- -GGGaUGGUGCG--GCAGuUGa--AGGa--------GCG- -5'
21509 5' -53.9 NC_004812.1 + 7015 0.66 0.961698
Target:  5'- cCCCU--CGCGCUG-CGGgUUCCUCGa -3'
miRNA:   3'- -GGGAugGUGCGGCaGUUgAAGGAGCg -5'
21509 5' -53.9 NC_004812.1 + 133145 0.66 0.965057
Target:  5'- uCCCUcgccgcgcGCCuCGCCGaCGACccgCuCUCGCg -3'
miRNA:   3'- -GGGA--------UGGuGCGGCaGUUGaa-G-GAGCG- -5'
21509 5' -53.9 NC_004812.1 + 55448 0.66 0.968204
Target:  5'- uCCCcGCCGCgGCCGUCAGgUcgCagaagCGCa -3'
miRNA:   3'- -GGGaUGGUG-CGGCAGUUgAa-Gga---GCG- -5'
21509 5' -53.9 NC_004812.1 + 85001 0.66 0.968204
Target:  5'- gUCCUGUCGCGCCGagAGCggCUguacgCGCg -3'
miRNA:   3'- -GGGAUGGUGCGGCagUUGaaGGa----GCG- -5'
21509 5' -53.9 NC_004812.1 + 33472 0.66 0.961698
Target:  5'- gCCCUGCgGCggacgGCCGaCcuCUUCCUgGCc -3'
miRNA:   3'- -GGGAUGgUG-----CGGCaGuuGAAGGAgCG- -5'
21509 5' -53.9 NC_004812.1 + 32502 0.66 0.965057
Target:  5'- gCgUACCGCGuuGUCGGCggcacgagcUCgUCGUa -3'
miRNA:   3'- gGgAUGGUGCggCAGUUGa--------AGgAGCG- -5'
21509 5' -53.9 NC_004812.1 + 43006 0.66 0.976431
Target:  5'- cUCCaggACCGCGCCGgaagucgCGACgauggggUCCUggggcCGCa -3'
miRNA:   3'- -GGGa--UGGUGCGGCa------GUUGa------AGGA-----GCG- -5'
21509 5' -53.9 NC_004812.1 + 138541 0.66 0.961698
Target:  5'- cCCCauggcCCACGCCcucGUgAACg-CCUCGCu -3'
miRNA:   3'- -GGGau---GGUGCGG---CAgUUGaaGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.