miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 76614 0.66 0.988624
Target:  5'- uGGCCucggacacgGCCUGGGcGACCCGggg--CGCg -3'
miRNA:   3'- -CCGG---------UGGGCUCaUUGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 23784 0.66 0.988624
Target:  5'- cGGCCAUCCGAcgcGUGcgcgGCuCCAUgcgCgccgCGCg -3'
miRNA:   3'- -CCGGUGGGCU---CAU----UG-GGUAa--Gaa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 128848 0.66 0.987736
Target:  5'- gGGCCGCCCGccccugcgggccgcgGGcGGCCCg--CUgacCGCg -3'
miRNA:   3'- -CCGGUGGGC---------------UCaUUGGGuaaGAa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 54549 0.66 0.987115
Target:  5'- cGGCgCGCCCGGcGcGGCCCcggCcUCGCc -3'
miRNA:   3'- -CCG-GUGGGCU-CaUUGGGuaaGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 108908 0.66 0.987115
Target:  5'- cGGCCgggcGCCCGGGUcggguaaucGCCCGggggUCGUg -3'
miRNA:   3'- -CCGG----UGGGCUCAu--------UGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 108346 0.66 0.987115
Target:  5'- gGGCCuccagcGCCCccGUGACCCggUCcaggUUGCg -3'
miRNA:   3'- -CCGG------UGGGcuCAUUGGGuaAGa---AGCG- -5'
21511 3' -52.2 NC_004812.1 + 13010 0.66 0.987115
Target:  5'- cGCCGCCgGAGgcgGCCUgaUCgccgggggUCGCg -3'
miRNA:   3'- cCGGUGGgCUCau-UGGGuaAGa-------AGCG- -5'
21511 3' -52.2 NC_004812.1 + 141988 0.66 0.987115
Target:  5'- aGGCCGCgCGGGUGcCCCGgc---UGCa -3'
miRNA:   3'- -CCGGUGgGCUCAUuGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 90317 0.66 0.987115
Target:  5'- cGCCAgCCgCGAGgcGCUCAUccucgcCUUCGUg -3'
miRNA:   3'- cCGGU-GG-GCUCauUGGGUAa-----GAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 57835 0.66 0.985455
Target:  5'- cGCCGCCUcGGcGGCCCAcUCgcCGCc -3'
miRNA:   3'- cCGGUGGGcUCaUUGGGUaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 127476 0.66 0.985455
Target:  5'- gGGaCCGCCCGugcGUcgcgacgucGACCUuggcgcgcUUCUUCGCg -3'
miRNA:   3'- -CC-GGUGGGCu--CA---------UUGGGu-------AAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 83003 0.66 0.985455
Target:  5'- cGGgCGCCgGGGcGAUCC--UCUUCGUg -3'
miRNA:   3'- -CCgGUGGgCUCaUUGGGuaAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 92411 0.66 0.985455
Target:  5'- gGGCCGCCCGAcacccCCCAUcUCgagUCa- -3'
miRNA:   3'- -CCGGUGGGCUcauu-GGGUA-AGa--AGcg -5'
21511 3' -52.2 NC_004812.1 + 78154 0.66 0.985455
Target:  5'- aGGCCggcaucGCCCGcgaGGUGACCgAgugCU-CGCg -3'
miRNA:   3'- -CCGG------UGGGC---UCAUUGGgUaa-GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 137868 0.66 0.985455
Target:  5'- aGGUgCGCCgCGAGUAcCCCGccg-UCGCg -3'
miRNA:   3'- -CCG-GUGG-GCUCAUuGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 11542 0.66 0.985455
Target:  5'- -aCCACCCGAGgccGGCUCuggAUUCcaUCGCg -3'
miRNA:   3'- ccGGUGGGCUCa--UUGGG---UAAGa-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 120476 0.66 0.985455
Target:  5'- cGGCCaACCCGuGggccuCCCAgcgCUucUCGUa -3'
miRNA:   3'- -CCGG-UGGGCuCauu--GGGUaa-GA--AGCG- -5'
21511 3' -52.2 NC_004812.1 + 94074 0.66 0.985105
Target:  5'- gGGCC-CCCGGG-AACCCcugccgcccgCU-CGCg -3'
miRNA:   3'- -CCGGuGGGCUCaUUGGGuaa-------GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 116528 0.66 0.985105
Target:  5'- cGGCCGCCCGccgcccgccGCCCGgaaaagCGCa -3'
miRNA:   3'- -CCGGUGGGCucau-----UGGGUaagaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 153610 0.66 0.984384
Target:  5'- cGGCCGCCUGGGccgGcaacuggaccggcccGCCCGacgUCUcggCGCu -3'
miRNA:   3'- -CCGGUGGGCUCa--U---------------UGGGUa--AGAa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.