miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 5' -42.7 NC_004812.1 + 88006 0.67 1
Target:  5'- uCGACgGGGGUCAGGU---C-CUCGAACc -3'
miRNA:   3'- -GCUG-CUCUAGUUUAuuuGuGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 113186 0.67 1
Target:  5'- cCGGCGAGAUaauGUccGCGCUCGuggucGACu -3'
miRNA:   3'- -GCUGCUCUAguuUAuuUGUGAGC-----UUG- -5'
21511 5' -42.7 NC_004812.1 + 23376 0.68 1
Target:  5'- aCGACGGGcgCGGAUcccGGCGggCGAGCg -3'
miRNA:   3'- -GCUGCUCuaGUUUAu--UUGUgaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 119798 0.67 1
Target:  5'- cCGGCGAGAacacgcUCAcGUAcGCGCUcauggCGAGCu -3'
miRNA:   3'- -GCUGCUCU------AGUuUAUuUGUGA-----GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 115352 0.66 1
Target:  5'- -aGCGGGggCGGGcAAACAC-CGAACg -3'
miRNA:   3'- gcUGCUCuaGUUUaUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 110421 0.68 1
Target:  5'- gGGCGAGccguaccgcguguUCGcGUGGACGCUCGAc- -3'
miRNA:   3'- gCUGCUCu------------AGUuUAUUUGUGAGCUug -5'
21511 5' -42.7 NC_004812.1 + 61892 0.66 1
Target:  5'- uGGCGAGGgggaucCAGAUGu--GCUCGGGCc -3'
miRNA:   3'- gCUGCUCUa-----GUUUAUuugUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 78427 0.66 1
Target:  5'- gGGCGuugauGGUCAGccgcGAGCACUCGGu- -3'
miRNA:   3'- gCUGCu----CUAGUUua--UUUGUGAGCUug -5'
21511 5' -42.7 NC_004812.1 + 14085 0.66 1
Target:  5'- aCGACGAuGuugcugCGGGUGAACGCgggGAGCg -3'
miRNA:   3'- -GCUGCU-Cua----GUUUAUUUGUGag-CUUG- -5'
21511 5' -42.7 NC_004812.1 + 95559 0.66 1
Target:  5'- cCGGCGGGGUCGAGcgggcUAAccGCACggccgcgcccgcgcgCGGGCg -3'
miRNA:   3'- -GCUGCUCUAGUUU-----AUU--UGUGa--------------GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 74845 0.68 1
Target:  5'- aCGAUGAGAUggCGGA-GAACA-UCGAGCa -3'
miRNA:   3'- -GCUGCUCUA--GUUUaUUUGUgAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 20148 0.68 1
Target:  5'- cCGGcCGGGAgcUCGAucggcGGCGCUCGGGCc -3'
miRNA:   3'- -GCU-GCUCU--AGUUuau--UUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 114915 0.67 1
Target:  5'- -aGCGAGGUgAGGUAcugggcgaGGCACUCGucGACg -3'
miRNA:   3'- gcUGCUCUAgUUUAU--------UUGUGAGC--UUG- -5'
21511 5' -42.7 NC_004812.1 + 11677 0.67 1
Target:  5'- cCGGCGAGc-------GGCACUCGGGCa -3'
miRNA:   3'- -GCUGCUCuaguuuauUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 106100 0.67 1
Target:  5'- gGugGAGAgcagcgcgCGGGUGAGCGcCUCGGc- -3'
miRNA:   3'- gCugCUCUa-------GUUUAUUUGU-GAGCUug -5'
21511 5' -42.7 NC_004812.1 + 66719 0.67 1
Target:  5'- gCGGCGAagaagaugcccucGAUCAggaucaucagGAUGAACuuCUCGGGCa -3'
miRNA:   3'- -GCUGCU-------------CUAGU----------UUAUUUGu-GAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 128466 0.68 1
Target:  5'- gGACGAGGUCGAggaccGUcucgccgaucaggagGAGCAgCUCGAGg -3'
miRNA:   3'- gCUGCUCUAGUU-----UA---------------UUUGU-GAGCUUg -5'
21511 5' -42.7 NC_004812.1 + 83899 0.68 1
Target:  5'- gCGACGAGAUCGAGga---GCUCc--- -3'
miRNA:   3'- -GCUGCUCUAGUUUauuugUGAGcuug -5'
21511 5' -42.7 NC_004812.1 + 108853 0.66 1
Target:  5'- aGACGGGAacgCAGAaGAGCGCcgCGAu- -3'
miRNA:   3'- gCUGCUCUa--GUUUaUUUGUGa-GCUug -5'
21511 5' -42.7 NC_004812.1 + 15507 0.66 1
Target:  5'- gCGAUGAGGggGAggAGACGacgccgccuCUCGAGCg -3'
miRNA:   3'- -GCUGCUCUagUUuaUUUGU---------GAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.