miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 54570 0.66 0.925883
Target:  5'- --cGGGGCGCCgCGGgagacgGAggcgGACGaGCCa -3'
miRNA:   3'- auaUUCUGCGG-GCCa-----CUa---CUGC-CGGc -5'
21512 3' -55.5 NC_004812.1 + 45813 0.66 0.925883
Target:  5'- ---cAGACGCCCGG-GAgcccGACGaGCgGc -3'
miRNA:   3'- auauUCUGCGGGCCaCUa---CUGC-CGgC- -5'
21512 3' -55.5 NC_004812.1 + 16669 0.66 0.925883
Target:  5'- --aGAGAaagucuaGCCCgGGUGA-GGCGGUCa -3'
miRNA:   3'- auaUUCUg------CGGG-CCACUaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 72089 0.66 0.925883
Target:  5'- ---uGGACGCCCGG-GAUGGgaGGUUu -3'
miRNA:   3'- auauUCUGCGGGCCaCUACUg-CCGGc -5'
21512 3' -55.5 NC_004812.1 + 13513 0.66 0.925883
Target:  5'- --cGGGGC-CCaCGGc-GUGACGGCCGg -3'
miRNA:   3'- auaUUCUGcGG-GCCacUACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 141988 0.66 0.925883
Target:  5'- ------cCGCCCgaGGUGGUggaGACGGCCa -3'
miRNA:   3'- auauucuGCGGG--CCACUA---CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 38517 0.66 0.925883
Target:  5'- --gGAGGuCGCgCCGGaGAcgcgcGGCGGCCGg -3'
miRNA:   3'- auaUUCU-GCG-GGCCaCUa----CUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 127986 0.66 0.920384
Target:  5'- --cGGGGCG-CCGGcGgcGGCGGCCu -3'
miRNA:   3'- auaUUCUGCgGGCCaCuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 16010 0.66 0.920384
Target:  5'- --gAGGGCGCCgGcGcccAUGGCGGCCa -3'
miRNA:   3'- auaUUCUGCGGgC-Cac-UACUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 48869 0.66 0.920384
Target:  5'- --cAAGACGCaguucgCGGccGcgGGCGGCCGc -3'
miRNA:   3'- auaUUCUGCGg-----GCCa-CuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 47587 0.66 0.920384
Target:  5'- --gAGGGCGCUCGG-GGUcGCGGCg- -3'
miRNA:   3'- auaUUCUGCGGGCCaCUAcUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 54853 0.66 0.920384
Target:  5'- --gAGGGCGacuaCCCGGgGGUGGCGGgCa -3'
miRNA:   3'- auaUUCUGC----GGGCCaCUACUGCCgGc -5'
21512 3' -55.5 NC_004812.1 + 2478 0.66 0.920384
Target:  5'- --cGGGGCG-CCGGcGgcGGCGGCCu -3'
miRNA:   3'- auaUUCUGCgGGCCaCuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 67772 0.66 0.920384
Target:  5'- --gGAGGCggcgGCCCGGggcGcgGGCGGCUu -3'
miRNA:   3'- auaUUCUG----CGGGCCa--CuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 55396 0.66 0.920384
Target:  5'- ----cGGCGCCCc-UGcUGGCGGCCGc -3'
miRNA:   3'- auauuCUGCGGGccACuACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 114408 0.66 0.91982
Target:  5'- --gAAGACGCCCucgacaccgcgcgGGUG--GACGGCgCGu -3'
miRNA:   3'- auaUUCUGCGGG-------------CCACuaCUGCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 112970 0.66 0.914645
Target:  5'- ----cGACGUCCGGcggcGAUGgaucgcggcgccGCGGCCGc -3'
miRNA:   3'- auauuCUGCGGGCCa---CUAC------------UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 112517 0.66 0.914645
Target:  5'- ---cAGAcuCGCUCGGcGAUGGCaGCCGa -3'
miRNA:   3'- auauUCU--GCGGGCCaCUACUGcCGGC- -5'
21512 3' -55.5 NC_004812.1 + 4644 0.66 0.914645
Target:  5'- --cGGGACGCCCGcGcGggGAggggcucgcCGGCCGu -3'
miRNA:   3'- auaUUCUGCGGGC-CaCuaCU---------GCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 35545 0.66 0.914645
Target:  5'- --cGGGACGCCCGcGcGggGAggggcucgcCGGCCGu -3'
miRNA:   3'- auaUUCUGCGGGC-CaCuaCU---------GCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.