miRNA display CGI


Results 21 - 40 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 69675 0.66 0.474878
Target:  5'- -gUGGCCGCCGGacucguCCUGGggGCC-GCg -3'
miRNA:   3'- gaGCCGGCGGCCc-----GGGCCagCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 148660 0.66 0.474878
Target:  5'- uCUCGGCCccccCCGGacgcgcccCCCGGccgCGCCgGCg -3'
miRNA:   3'- -GAGCCGGc---GGCCc-------GGGCCa--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 14215 0.66 0.474878
Target:  5'- cCUCGGCC-CCGcccccggcGGCCaCGGcgCGCCggGUg -3'
miRNA:   3'- -GAGCCGGcGGC--------CCGG-GCCa-GCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 49734 0.66 0.474878
Target:  5'- -aCGGCCGaCgGGGUCgGgGUCGCg-GCg -3'
miRNA:   3'- gaGCCGGC-GgCCCGGgC-CAGCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 7836 0.66 0.474878
Target:  5'- uCUCGGCgGCUcucucggggcgGGGgUCGGUCGUagcgGCg -3'
miRNA:   3'- -GAGCCGgCGG-----------CCCgGGCCAGCGga--CG- -5'
21512 5' -66.8 NC_004812.1 + 5155 0.66 0.474878
Target:  5'- gUCGGCCcgcgguCCGGGCCCGaGUCcuCCg-- -3'
miRNA:   3'- gAGCCGGc-----GGCCCGGGC-CAGc-GGacg -5'
21512 5' -66.8 NC_004812.1 + 75028 0.66 0.474878
Target:  5'- gCUCGGCCGCCuu-CUCGGUCuGCUccaGCa -3'
miRNA:   3'- -GAGCCGGCGGcccGGGCCAG-CGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 5812 0.66 0.474878
Target:  5'- --gGGCUGCgGGGCgCGGcggGCuCUGCg -3'
miRNA:   3'- gagCCGGCGgCCCGgGCCag-CG-GACG- -5'
21512 5' -66.8 NC_004812.1 + 130664 0.66 0.474878
Target:  5'- gUCGGCCcgcgguCCGGGCCCGaGUCcuCCg-- -3'
miRNA:   3'- gAGCCGGc-----GGCCCGGGC-CAGc-GGacg -5'
21512 5' -66.8 NC_004812.1 + 120066 0.66 0.474878
Target:  5'- cCUCGcGCCcggcgaccCCGGGCCCGGcccccgagcCGCCUccgGCc -3'
miRNA:   3'- -GAGC-CGGc-------GGCCCGGGCCa--------GCGGA---CG- -5'
21512 5' -66.8 NC_004812.1 + 99727 0.66 0.474878
Target:  5'- -cUGGCCGCaCaGGCCCGGgCGUuuCUGa -3'
miRNA:   3'- gaGCCGGCG-GcCCGGGCCaGCG--GACg -5'
21512 5' -66.8 NC_004812.1 + 115421 0.66 0.474878
Target:  5'- -gCGGCgCGCCGaccGGCgCGG-CGCCgagaGCg -3'
miRNA:   3'- gaGCCG-GCGGC---CCGgGCCaGCGGa---CG- -5'
21512 5' -66.8 NC_004812.1 + 138050 0.66 0.474878
Target:  5'- -gCGGCgGCggagCGGGCCCGcGcCGCgCUGg -3'
miRNA:   3'- gaGCCGgCG----GCCCGGGC-CaGCG-GACg -5'
21512 5' -66.8 NC_004812.1 + 139358 0.66 0.474878
Target:  5'- -gCGGUCGCgUGGGCCCGGggGCa-GUu -3'
miRNA:   3'- gaGCCGGCG-GCCCGGGCCagCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 101722 0.66 0.474878
Target:  5'- uCUUGGCCGgggggCGGGCCCuggGGUCcCCcgUGCc -3'
miRNA:   3'- -GAGCCGGCg----GCCCGGG---CCAGcGG--ACG- -5'
21512 5' -66.8 NC_004812.1 + 150967 0.66 0.474878
Target:  5'- cCUCGcGCCcggcgaccCCGGGCCCGGcccccgagcCGCCUccgGCc -3'
miRNA:   3'- -GAGC-CGGc-------GGCCCGGGCCa--------GCGGA---CG- -5'
21512 5' -66.8 NC_004812.1 + 36713 0.66 0.474878
Target:  5'- --gGGCUGCgGGGCgCGGcggGCuCUGCg -3'
miRNA:   3'- gagCCGGCGgCCCGgGCCag-CG-GACG- -5'
21512 5' -66.8 NC_004812.1 + 74382 0.66 0.474009
Target:  5'- gUCGGCCgaacggcgcuucgGCgCGGGCCgGGcCaGCCcGCu -3'
miRNA:   3'- gAGCCGG-------------CG-GCCCGGgCCaG-CGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 100081 0.66 0.474009
Target:  5'- aUCGGggGCCGGGCcgCCGGagCGCCUuauauccGCg -3'
miRNA:   3'- gAGCCggCGGCCCG--GGCCa-GCGGA-------CG- -5'
21512 5' -66.8 NC_004812.1 + 31733 0.66 0.472275
Target:  5'- gCUCGGCCGagaggcgcggggcggGGGCgCGG-CGCCcGCc -3'
miRNA:   3'- -GAGCCGGCgg-------------CCCGgGCCaGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.