miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 3' -52.4 NC_004812.1 + 145382 0.66 0.985817
Target:  5'- cCGGAacGGcGGGGGAGaugcgUC-CGuCGGAGGa -3'
miRNA:   3'- -GCCU--UC-CCCCUUCaa---AGaGC-GCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 91748 0.66 0.985817
Target:  5'- uGGggGGGaGGAAGagcgCcCGCGAgauguGGGc -3'
miRNA:   3'- gCCuuCCC-CCUUCaaa-GaGCGCU-----UCC- -5'
21513 3' -52.4 NC_004812.1 + 141784 0.66 0.985817
Target:  5'- aCGGccgcgcGGGGGGgcGggccgCGCGggGGu -3'
miRNA:   3'- -GCCu-----UCCCCCuuCaaagaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 10716 0.66 0.985817
Target:  5'- aCGGGcuccAGGGGGAGGgg-Cg-GCGggGcGg -3'
miRNA:   3'- -GCCU----UCCCCCUUCaaaGagCGCuuC-C- -5'
21513 3' -52.4 NC_004812.1 + 8870 0.66 0.985817
Target:  5'- gGGgcGGGGGAaaGGgaggagGCGGAGGa -3'
miRNA:   3'- gCCuuCCCCCU--UCaaagagCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 1211 0.66 0.985817
Target:  5'- uCGGccGGGGGcGGcg-C-CGCGggGGc -3'
miRNA:   3'- -GCCuuCCCCCuUCaaaGaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 32112 0.66 0.985817
Target:  5'- uCGGccGGGGGcGGcg-C-CGCGggGGc -3'
miRNA:   3'- -GCCuuCCCCCuUCaaaGaGCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 99847 0.66 0.985647
Target:  5'- gGGAggAGGGGGAcGUcgcggccUUCuUCGUGGAGu -3'
miRNA:   3'- gCCU--UCCCCCUuCA-------AAG-AGCGCUUCc -5'
21513 3' -52.4 NC_004812.1 + 156313 0.66 0.984044
Target:  5'- aGGGAGGGcGGggGa----CGgGAGGGg -3'
miRNA:   3'- gCCUUCCC-CCuuCaaagaGCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 17939 0.66 0.984044
Target:  5'- uCGGggGGGGaGAGGgggUCgcccggGCGAcGGc -3'
miRNA:   3'- -GCCuuCCCC-CUUCaa-AGag----CGCUuCC- -5'
21513 3' -52.4 NC_004812.1 + 30805 0.66 0.984044
Target:  5'- aGGGAGGGcGGggGa----CGgGAGGGg -3'
miRNA:   3'- gCCUUCCC-CCuuCaaagaGCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 70919 0.66 0.984044
Target:  5'- nGGggGcGGGAGGUgggaUCUgcCGuCGggGGa -3'
miRNA:   3'- gCCuuCcCCCUUCAa---AGA--GC-GCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 145843 0.66 0.982108
Target:  5'- cCGGGcccGGGGAcGgagUCUCGCGcAGGc -3'
miRNA:   3'- -GCCUuc-CCCCUuCaa-AGAGCGCuUCC- -5'
21513 3' -52.4 NC_004812.1 + 106796 0.66 0.982108
Target:  5'- gCGGGAGGGGGc-----CUCGCGccgacuGGGc -3'
miRNA:   3'- -GCCUUCCCCCuucaaaGAGCGCu-----UCC- -5'
21513 3' -52.4 NC_004812.1 + 13566 0.66 0.982108
Target:  5'- -cGAGGGGGGGcgccggagcgAGUUUCcC-CGggGGg -3'
miRNA:   3'- gcCUUCCCCCU----------UCAAAGaGcGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 76227 0.66 0.982108
Target:  5'- gCGGAAGGGGGGg----CggGCGgcGGa -3'
miRNA:   3'- -GCCUUCCCCCUucaaaGagCGCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 11361 0.66 0.981286
Target:  5'- aCGGGAGGGGGgcGguaccgggGCGggGa -3'
miRNA:   3'- -GCCUUCCCCCuuCaaagag--CGCuuCc -5'
21513 3' -52.4 NC_004812.1 + 37883 0.67 0.980864
Target:  5'- gGGggGGGGGAAagggguguguGUUUCUCcuccuccccucgccuGCGGGu- -3'
miRNA:   3'- gCCuuCCCCCUU----------CAAAGAG---------------CGCUUcc -5'
21513 3' -52.4 NC_004812.1 + 36524 0.67 0.98
Target:  5'- cCGGAGGcggcucGGGGGccgggcccGGggUCgccgggCGCGAGGGg -3'
miRNA:   3'- -GCCUUC------CCCCU--------UCaaAGa-----GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 21588 0.67 0.98
Target:  5'- ----cGGGGGugucUUUCUCGCGAcgGGGa -3'
miRNA:   3'- gccuuCCCCCuuc-AAAGAGCGCU--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.