miRNA display CGI


Results 21 - 40 of 454 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 30182 0.66 0.907
Target:  5'- -cCGCgCGCGGcuGCCUGGGgggcacaGCUCCc -3'
miRNA:   3'- uuGCGgGCGCUuuUGGGCCU-------UGAGGc -5'
21513 5' -56.3 NC_004812.1 + 67494 0.66 0.903915
Target:  5'- uGGCGCCCGCGGGccgucgucucgcgcGCCUcGAACUCgGc -3'
miRNA:   3'- -UUGCGGGCGCUUu-------------UGGGcCUUGAGgC- -5'
21513 5' -56.3 NC_004812.1 + 1210 0.66 0.901405
Target:  5'- cACGCCCGgcccggccCGGcc-CCCGGggUUCCu -3'
miRNA:   3'- uUGCGGGC--------GCUuuuGGGCCuuGAGGc -5'
21513 5' -56.3 NC_004812.1 + 145739 0.66 0.901405
Target:  5'- cAGCGCCCGCGGG---UCGGGggGCUCg- -3'
miRNA:   3'- -UUGCGGGCGCUUuugGGCCU--UGAGgc -5'
21513 5' -56.3 NC_004812.1 + 37944 0.66 0.901405
Target:  5'- uGCGCgCCGCGAcuguGGACCgcgccaGGGccGCUCCa -3'
miRNA:   3'- uUGCG-GGCGCU----UUUGGg-----CCU--UGAGGc -5'
21513 5' -56.3 NC_004812.1 + 28679 0.66 0.901405
Target:  5'- cGCGCCUGCGcgcGCUgGGGGCUggCCGc -3'
miRNA:   3'- uUGCGGGCGCuuuUGGgCCUUGA--GGC- -5'
21513 5' -56.3 NC_004812.1 + 54929 0.66 0.901405
Target:  5'- -cCGCCugcCGCGAGAagacGCCCuGGcGCUCCu -3'
miRNA:   3'- uuGCGG---GCGCUUU----UGGG-CCuUGAGGc -5'
21513 5' -56.3 NC_004812.1 + 106493 0.66 0.901405
Target:  5'- gAGC-CCCGCGAAGAagggccCCCGGGGgUCg- -3'
miRNA:   3'- -UUGcGGGCGCUUUU------GGGCCUUgAGgc -5'
21513 5' -56.3 NC_004812.1 + 95778 0.66 0.901405
Target:  5'- --aGCCCGUG-GAGCCgGGGGCggugCUGg -3'
miRNA:   3'- uugCGGGCGCuUUUGGgCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 124202 0.66 0.901405
Target:  5'- cGCGCCCGCGGcggcgaccgAGGCCgCGGcGCaCCu -3'
miRNA:   3'- uUGCGGGCGCU---------UUUGG-GCCuUGaGGc -5'
21513 5' -56.3 NC_004812.1 + 49899 0.66 0.901405
Target:  5'- cGCGaCCC-CGAGGGCCCcccGGGGC-CCGa -3'
miRNA:   3'- uUGC-GGGcGCUUUUGGG---CCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 7043 0.66 0.901405
Target:  5'- uGCGCgCCGCGAcuguGGACCgcgccaGGGccGCUCCa -3'
miRNA:   3'- uUGCG-GGCGCU----UUUGGg-----CCU--UGAGGc -5'
21513 5' -56.3 NC_004812.1 + 3550 0.66 0.901405
Target:  5'- --gGCCCGCGcccAGGCCC-GAACUCa- -3'
miRNA:   3'- uugCGGGCGCu--UUUGGGcCUUGAGgc -5'
21513 5' -56.3 NC_004812.1 + 34451 0.66 0.901405
Target:  5'- --gGCCCGCGcccAGGCCC-GAACUCa- -3'
miRNA:   3'- uugCGGGCGCu--UUUGGGcCUUGAGgc -5'
21513 5' -56.3 NC_004812.1 + 47102 0.66 0.901405
Target:  5'- uAACGCCaCGCGGGugUgCGGGACgcugCUGg -3'
miRNA:   3'- -UUGCGG-GCGCUUuuGgGCCUUGa---GGC- -5'
21513 5' -56.3 NC_004812.1 + 27983 0.66 0.901405
Target:  5'- --aGCCCGgaGAGAucCCCGGGGCguaCCGc -3'
miRNA:   3'- uugCGGGCg-CUUUu-GGGCCUUGa--GGC- -5'
21513 5' -56.3 NC_004812.1 + 111606 0.66 0.901405
Target:  5'- uGGCGCCCGCGAcguACCUccuGAACUacgCGg -3'
miRNA:   3'- -UUGCGGGCGCUuu-UGGGc--CUUGAg--GC- -5'
21513 5' -56.3 NC_004812.1 + 59850 0.66 0.901405
Target:  5'- -uCGCCCGUGAAcuCCUGGuucccgCCGa -3'
miRNA:   3'- uuGCGGGCGCUUuuGGGCCuuga--GGC- -5'
21513 5' -56.3 NC_004812.1 + 154187 0.66 0.901405
Target:  5'- cGCGCCUGCGcgcGCUgGGGGCUggCCGc -3'
miRNA:   3'- uUGCGGGCGCuuuUGGgCCUUGA--GGC- -5'
21513 5' -56.3 NC_004812.1 + 39644 0.66 0.901405
Target:  5'- cACGCCaC-CGAcAGCCCG-AGCUCCa -3'
miRNA:   3'- uUGCGG-GcGCUuUUGGGCcUUGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.