miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21516 3' -60.4 NC_004812.1 + 94225 0.66 0.771708
Target:  5'- gCUCCUCGCCgG-CGUcgCCGGCCu-- -3'
miRNA:   3'- gGGGGAGUGGgUgGCAa-GGCCGGuag -5'
21516 3' -60.4 NC_004812.1 + 6971 0.66 0.771708
Target:  5'- cCCCCUUCcCCCACC---CCGcccCCAUCg -3'
miRNA:   3'- -GGGGGAGuGGGUGGcaaGGCc--GGUAG- -5'
21516 3' -60.4 NC_004812.1 + 66179 0.66 0.771708
Target:  5'- uUCCCaC-CCCGCCGUcCCGcGCCcgCa -3'
miRNA:   3'- gGGGGaGuGGGUGGCAaGGC-CGGuaG- -5'
21516 3' -60.4 NC_004812.1 + 119715 0.66 0.771708
Target:  5'- uCCCCCUCGuCCCcCCGacccUCgGcGCCAa- -3'
miRNA:   3'- -GGGGGAGU-GGGuGGCa---AGgC-CGGUag -5'
21516 3' -60.4 NC_004812.1 + 54887 0.66 0.771708
Target:  5'- aCCCaggGCCCGCCcc-CCGGCCAa- -3'
miRNA:   3'- gGGGgagUGGGUGGcaaGGCCGGUag -5'
21516 3' -60.4 NC_004812.1 + 96474 0.66 0.764456
Target:  5'- gCCCCUCcuggaggggcaggacACgCCGCUGgcgcgggccaCGGCCAUCg -3'
miRNA:   3'- gGGGGAG---------------UG-GGUGGCaag-------GCCGGUAG- -5'
21516 3' -60.4 NC_004812.1 + 63074 0.66 0.762632
Target:  5'- gCCCCCacgGCCC-CC--UCCGGCCGc- -3'
miRNA:   3'- -GGGGGag-UGGGuGGcaAGGCCGGUag -5'
21516 3' -60.4 NC_004812.1 + 2431 0.66 0.762632
Target:  5'- cCCCCCugcgguuucUCAUCC-CCGauaggcgCCGGCCGa- -3'
miRNA:   3'- -GGGGG---------AGUGGGuGGCaa-----GGCCGGUag -5'
21516 3' -60.4 NC_004812.1 + 107425 0.66 0.762632
Target:  5'- --gCCagGCCCACCGgccgcgcggCGGCCGUCg -3'
miRNA:   3'- gggGGagUGGGUGGCaag------GCCGGUAG- -5'
21516 3' -60.4 NC_004812.1 + 35037 0.66 0.762632
Target:  5'- gCCCCCgC-CCCGCCGagCaggGGCCGa- -3'
miRNA:   3'- -GGGGGaGuGGGUGGCaaGg--CCGGUag -5'
21516 3' -60.4 NC_004812.1 + 106032 0.66 0.762632
Target:  5'- aUCCCggcCugCCGCCGgcgCuCGGCCAc- -3'
miRNA:   3'- gGGGGa--GugGGUGGCaa-G-GCCGGUag -5'
21516 3' -60.4 NC_004812.1 + 111410 0.66 0.762632
Target:  5'- gCCgUCUCGCugccggccgcgCCGCCGggcUCCGGCCcccggGUCa -3'
miRNA:   3'- -GGgGGAGUG-----------GGUGGCa--AGGCCGG-----UAG- -5'
21516 3' -60.4 NC_004812.1 + 17901 0.66 0.762632
Target:  5'- gCCCgCCgCGCCCGCgGUcgUCCGGgCGc- -3'
miRNA:   3'- -GGG-GGaGUGGGUGgCA--AGGCCgGUag -5'
21516 3' -60.4 NC_004812.1 + 95228 0.66 0.762632
Target:  5'- uUCCCUCAcCCCGCCGc-CCcGCCcUCu -3'
miRNA:   3'- gGGGGAGU-GGGUGGCaaGGcCGGuAG- -5'
21516 3' -60.4 NC_004812.1 + 33332 0.66 0.762632
Target:  5'- cCCCCCugcgguuucUCAUCC-CCGauaggcgCCGGCCGa- -3'
miRNA:   3'- -GGGGG---------AGUGGGuGGCaa-----GGCCGGUag -5'
21516 3' -60.4 NC_004812.1 + 119647 0.66 0.762632
Target:  5'- cCCCCUUCGCCUccGCCGccUUCCccucGCCGc- -3'
miRNA:   3'- -GGGGGAGUGGG--UGGC--AAGGc---CGGUag -5'
21516 3' -60.4 NC_004812.1 + 66051 0.66 0.762632
Target:  5'- gCCCUCUcCGCCCccgccauaccagACCGUcUUGGCCAa- -3'
miRNA:   3'- -GGGGGA-GUGGG------------UGGCAaGGCCGGUag -5'
21516 3' -60.4 NC_004812.1 + 104551 0.66 0.762632
Target:  5'- aCCCCCgguggCcgauGCCCGCgUGUUCgccaCGGCCGUg -3'
miRNA:   3'- -GGGGGa----G----UGGGUG-GCAAG----GCCGGUAg -5'
21516 3' -60.4 NC_004812.1 + 150548 0.66 0.762632
Target:  5'- cCCCCUUCGCCUccGCCGccUUCCccucGCCGc- -3'
miRNA:   3'- -GGGGGAGUGGG--UGGC--AAGGc---CGGUag -5'
21516 3' -60.4 NC_004812.1 + 138554 0.66 0.762632
Target:  5'- gCCCUCgugaaCGCCUcgcuGCUGgugCCGGUCGUCg -3'
miRNA:   3'- -GGGGGa----GUGGG----UGGCaa-GGCCGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.