miRNA display CGI


Results 1 - 20 of 842 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21516 5' -51.3 NC_004812.1 + 125433 0.66 0.995528
Target:  5'- aCGGCGGCgGAG-CG-CGCGCGGGa- -3'
miRNA:   3'- gGUUGCCGgCUUaGCuGUGUGUUCcg -5'
21516 5' -51.3 NC_004812.1 + 103278 0.66 0.995528
Target:  5'- gCGACGGCCGcccccCGcACGCugAcGGUg -3'
miRNA:   3'- gGUUGCCGGCuua--GC-UGUGugUuCCG- -5'
21516 5' -51.3 NC_004812.1 + 54430 0.66 0.995528
Target:  5'- aCCGugGcGCCG-GUCGGCG-GC-GGGCa -3'
miRNA:   3'- -GGUugC-CGGCuUAGCUGUgUGuUCCG- -5'
21516 5' -51.3 NC_004812.1 + 11343 0.66 0.995528
Target:  5'- gCCGACGGUgUGGGcUCGACGggaGgGGGGCg -3'
miRNA:   3'- -GGUUGCCG-GCUU-AGCUGUg--UgUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 83503 0.66 0.995528
Target:  5'- gCGACGGCCagg-CGGUGCGCGagcAGGCc -3'
miRNA:   3'- gGUUGCCGGcuuaGCUGUGUGU---UCCG- -5'
21516 5' -51.3 NC_004812.1 + 1255 0.66 0.995528
Target:  5'- gUCuGCGGCUGAcugCGACGgGCAGauuccGGCc -3'
miRNA:   3'- -GGuUGCCGGCUua-GCUGUgUGUU-----CCG- -5'
21516 5' -51.3 NC_004812.1 + 6840 0.66 0.995528
Target:  5'- gCGGCGGCCcucgcGGUCGGCGaggcggccCGCcgGGGGCg -3'
miRNA:   3'- gGUUGCCGGc----UUAGCUGU--------GUG--UUCCG- -5'
21516 5' -51.3 NC_004812.1 + 49219 0.66 0.995528
Target:  5'- cCCGgggGCGGugccguCCGAggCGAuCGCGCGggGGGCg -3'
miRNA:   3'- -GGU---UGCC------GGCUuaGCU-GUGUGU--UCCG- -5'
21516 5' -51.3 NC_004812.1 + 46169 0.66 0.995528
Target:  5'- gCCAGCaGGUCGAGcguccacgCGAaCACGCGGuacGGCu -3'
miRNA:   3'- -GGUUG-CCGGCUUa-------GCU-GUGUGUU---CCG- -5'
21516 5' -51.3 NC_004812.1 + 135605 0.66 0.995528
Target:  5'- cCCcGCGGCCGA---GGCGCGgc-GGCg -3'
miRNA:   3'- -GGuUGCCGGCUuagCUGUGUguuCCG- -5'
21516 5' -51.3 NC_004812.1 + 65348 0.66 0.995528
Target:  5'- aUAGUGGCCca---GACGCGCGAGGUc -3'
miRNA:   3'- gGUUGCCGGcuuagCUGUGUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 19691 0.66 0.995528
Target:  5'- -gGGCGGCCcGGUCGGCcucggGCcCAAcGGCg -3'
miRNA:   3'- ggUUGCCGGcUUAGCUG-----UGuGUU-CCG- -5'
21516 5' -51.3 NC_004812.1 + 77026 0.66 0.995528
Target:  5'- uCCAGCauGGCCucuauGGcgCGcACGCGCGcGGCg -3'
miRNA:   3'- -GGUUG--CCGG-----CUuaGC-UGUGUGUuCCG- -5'
21516 5' -51.3 NC_004812.1 + 76265 0.66 0.995528
Target:  5'- cCCGcGCGcGCCGccucgaCGGCGCGCGcGGCc -3'
miRNA:   3'- -GGU-UGC-CGGCuua---GCUGUGUGUuCCG- -5'
21516 5' -51.3 NC_004812.1 + 82499 0.66 0.995528
Target:  5'- ---cCGGCCGucacCGACAagcuCGGGGCg -3'
miRNA:   3'- gguuGCCGGCuua-GCUGUgu--GUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 67149 0.66 0.995528
Target:  5'- aCCu-CGGcCCGGA--GGCGcCGCAGGGCc -3'
miRNA:   3'- -GGuuGCC-GGCUUagCUGU-GUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 72950 0.66 0.995528
Target:  5'- uCCAcguCGGaCGAcaCGACcucuCGCAGGGCg -3'
miRNA:   3'- -GGUu--GCCgGCUuaGCUGu---GUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 126763 0.66 0.995528
Target:  5'- gUCuGCGGCUGAcugCGACGgGCAGauuccGGCc -3'
miRNA:   3'- -GGuUGCCGGCUua-GCUGUgUGUU-----CCG- -5'
21516 5' -51.3 NC_004812.1 + 151542 0.66 0.995528
Target:  5'- gCGACGGCgGGGcCGGgGCcgGGGGCg -3'
miRNA:   3'- gGUUGCCGgCUUaGCUgUGugUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 26033 0.66 0.995528
Target:  5'- gCGACGGCgGGGcCGGgGCcgGGGGCg -3'
miRNA:   3'- gGUUGCCGgCUUaGCUgUGugUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.