miRNA display CGI


Results 1 - 20 of 842 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21516 5' -51.3 NC_004812.1 + 156425 0.66 0.992024
Target:  5'- cCCGGCGGCgCGcgcgCGAaaauaaACGCGcGGCg -3'
miRNA:   3'- -GGUUGCCG-GCuua-GCUg-----UGUGUuCCG- -5'
21516 5' -51.3 NC_004812.1 + 104960 0.66 0.992024
Target:  5'- --cGCGGCgGGGagaggggcucUCGGCGCGCAcgcggccgcGGGCc -3'
miRNA:   3'- gguUGCCGgCUU----------AGCUGUGUGU---------UCCG- -5'
21516 5' -51.3 NC_004812.1 + 67083 0.66 0.993056
Target:  5'- gCCAgGCGGUCGAccacCGGCGCGaugcagucgaaGAGGCu -3'
miRNA:   3'- -GGU-UGCCGGCUua--GCUGUGUg----------UUCCG- -5'
21516 5' -51.3 NC_004812.1 + 106492 0.66 0.992024
Target:  5'- cCCGuggcuGgGGCgCGggUCcGCgGCGCGGGGCg -3'
miRNA:   3'- -GGU-----UgCCG-GCuuAGcUG-UGUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 60076 0.66 0.992024
Target:  5'- gCCGACcaGGCCGg--CGGCccGCGCcAGGUa -3'
miRNA:   3'- -GGUUG--CCGGCuuaGCUG--UGUGuUCCG- -5'
21516 5' -51.3 NC_004812.1 + 8676 0.66 0.992024
Target:  5'- aCCGGCGGCCcgg-UGcCAgGCcGGGCg -3'
miRNA:   3'- -GGUUGCCGGcuuaGCuGUgUGuUCCG- -5'
21516 5' -51.3 NC_004812.1 + 15 0.66 0.992024
Target:  5'- cCCGGCGGCgCGcgcgCGAaaauaaACGCGcGGCg -3'
miRNA:   3'- -GGUUGCCG-GCuua-GCUg-----UGUGUuCCG- -5'
21516 5' -51.3 NC_004812.1 + 1917 0.66 0.992024
Target:  5'- aUAugGGCCGAGgcucCGGC---CGGGGCg -3'
miRNA:   3'- gGUugCCGGCUUa---GCUGuguGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 106726 0.66 0.991915
Target:  5'- gCUGGCGGgCGAGggCGACGaggccuacuacguCAUggGGCg -3'
miRNA:   3'- -GGUUGCCgGCUUa-GCUGU-------------GUGuuCCG- -5'
21516 5' -51.3 NC_004812.1 + 82357 0.66 0.992958
Target:  5'- gCCcGCGGCCucgcagaGACGCGCGugcgccuucucgcAGGCg -3'
miRNA:   3'- -GGuUGCCGGcuuag--CUGUGUGU-------------UCCG- -5'
21516 5' -51.3 NC_004812.1 + 100482 0.66 0.992024
Target:  5'- --cGCGGCCGcc-CGgaGCGCGCA-GGCg -3'
miRNA:   3'- gguUGCCGGCuuaGC--UGUGUGUuCCG- -5'
21516 5' -51.3 NC_004812.1 + 137203 0.66 0.991579
Target:  5'- gCGGCGGCUGAGUCaccccgccguccuGGCccugcuggacguccGCGCGguGGGCg -3'
miRNA:   3'- gGUUGCCGGCUUAG-------------CUG--------------UGUGU--UCCG- -5'
21516 5' -51.3 NC_004812.1 + 94673 0.66 0.992024
Target:  5'- aCGACGGCgCGGGauccCGAgccCGCGCGGcGGCg -3'
miRNA:   3'- gGUUGCCG-GCUUa---GCU---GUGUGUU-CCG- -5'
21516 5' -51.3 NC_004812.1 + 82499 0.66 0.995528
Target:  5'- ---cCGGCCGucacCGACAagcuCGGGGCg -3'
miRNA:   3'- gguuGCCGGCuua-GCUGUgu--GUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 104138 0.66 0.992024
Target:  5'- uCCAugccGCGuGCCGGua-GGCGgCAgGAGGCg -3'
miRNA:   3'- -GGU----UGC-CGGCUuagCUGU-GUgUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 7825 0.66 0.993056
Target:  5'- cUCGGCGGgCGucUCGGCgGCucucuCGGGGCg -3'
miRNA:   3'- -GGUUGCCgGCuuAGCUG-UGu----GUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 82786 0.66 0.992024
Target:  5'- -gAGCGGCUccucgGggUCGA-ACACGGcGGCg -3'
miRNA:   3'- ggUUGCCGG-----CuuAGCUgUGUGUU-CCG- -5'
21516 5' -51.3 NC_004812.1 + 33780 0.66 0.992024
Target:  5'- cUCGGCGGCCGA--CGACAuCGCcc-GCu -3'
miRNA:   3'- -GGUUGCCGGCUuaGCUGU-GUGuucCG- -5'
21516 5' -51.3 NC_004812.1 + 16207 0.66 0.993056
Target:  5'- gCGGCGGacCCGGGcCG-CGCGCcgGAGGCg -3'
miRNA:   3'- gGUUGCC--GGCUUaGCuGUGUG--UUCCG- -5'
21516 5' -51.3 NC_004812.1 + 19755 0.66 0.993056
Target:  5'- aCCAGCccGGUgCGGGggucccaggCGACGCGCGccgGGGCg -3'
miRNA:   3'- -GGUUG--CCG-GCUUa--------GCUGUGUGU---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.