miRNA display CGI


Results 1 - 20 of 842 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21516 5' -51.3 NC_004812.1 + 53560 0.76 0.680976
Target:  5'- cCCGACGcaguccCCGAgGUCGACGCGCGacaGGGCg -3'
miRNA:   3'- -GGUUGCc-----GGCU-UAGCUGUGUGU---UCCG- -5'
21516 5' -51.3 NC_004812.1 + 26756 0.78 0.567042
Target:  5'- ---uCGGCCGAGUCGACGaAgAGGGCg -3'
miRNA:   3'- gguuGCCGGCUUAGCUGUgUgUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 139401 0.78 0.587622
Target:  5'- uCCAGCGGCaccggccgCGAA-CGACAC-CGGGGCg -3'
miRNA:   3'- -GGUUGCCG--------GCUUaGCUGUGuGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 7636 0.77 0.62808
Target:  5'- gCGGCGGCCgGggUCGGgGCGCGaagcugcGGGCc -3'
miRNA:   3'- gGUUGCCGG-CuuAGCUgUGUGU-------UCCG- -5'
21516 5' -51.3 NC_004812.1 + 73050 0.77 0.62912
Target:  5'- ----aGGCCGggUCGcUGCGCAGGGCc -3'
miRNA:   3'- gguugCCGGCuuAGCuGUGUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 30374 0.77 0.639521
Target:  5'- cUCGGCGGCCGggUCGGgGCucuccuccgGGGGCg -3'
miRNA:   3'- -GGUUGCCGGCuuAGCUgUGug-------UUCCG- -5'
21516 5' -51.3 NC_004812.1 + 117347 0.77 0.639521
Target:  5'- cCCGGCGGCCGc--CGACGCGguGGGg -3'
miRNA:   3'- -GGUUGCCGGCuuaGCUGUGUguUCCg -5'
21516 5' -51.3 NC_004812.1 + 105507 0.77 0.648876
Target:  5'- cCCGGCGGCCGAGUgggugugCGGCcgucauCACcGGGCg -3'
miRNA:   3'- -GGUUGCCGGCUUA-------GCUGu-----GUGuUCCG- -5'
21516 5' -51.3 NC_004812.1 + 14228 0.76 0.680976
Target:  5'- cCCGGCGGCCa---CGGCGCGCcGGGUg -3'
miRNA:   3'- -GGUUGCCGGcuuaGCUGUGUGuUCCG- -5'
21516 5' -51.3 NC_004812.1 + 47934 0.78 0.567042
Target:  5'- aCCAGCGGCCGGccCGGCGCGCGuucccGGa -3'
miRNA:   3'- -GGUUGCCGGCUuaGCUGUGUGUu----CCg -5'
21516 5' -51.3 NC_004812.1 + 1106 0.79 0.55682
Target:  5'- cCCGGCGGcCCGggUCGcuuCGC-CGGGGCc -3'
miRNA:   3'- -GGUUGCC-GGCuuAGCu--GUGuGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 27327 0.79 0.520507
Target:  5'- cCCGAUGGCCGGgaucaccaggggguuGUCGGCGCGCGgcccagccAGGUg -3'
miRNA:   3'- -GGUUGCCGGCU---------------UAGCUGUGUGU--------UCCG- -5'
21516 5' -51.3 NC_004812.1 + 76793 0.84 0.323061
Target:  5'- cCCAGCaGCCcccagaGGUCGGCGCGCAGGGCg -3'
miRNA:   3'- -GGUUGcCGGc-----UUAGCUGUGUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 54673 0.83 0.353958
Target:  5'- cCCAGCGGCCGggUCGcgGCGaGgAGGGCg -3'
miRNA:   3'- -GGUUGCCGGCuuAGC--UGUgUgUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 75444 0.83 0.353958
Target:  5'- gCGGCGGCCGggUCGcCGCG-GAGGCg -3'
miRNA:   3'- gGUUGCCGGCuuAGCuGUGUgUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 100399 0.81 0.439902
Target:  5'- gCCAcCGGCCGGagGUCGAUGCgccGCGAGGCc -3'
miRNA:   3'- -GGUuGCCGGCU--UAGCUGUG---UGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 62134 0.81 0.458474
Target:  5'- cCCGGaGGCCGGAUCGGCGgCGC-GGGCg -3'
miRNA:   3'- -GGUUgCCGGCUUAGCUGU-GUGuUCCG- -5'
21516 5' -51.3 NC_004812.1 + 140856 0.8 0.467916
Target:  5'- aCGACGuGCCGca--GGCGCGCAAGGCg -3'
miRNA:   3'- gGUUGC-CGGCuuagCUGUGUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 151325 0.8 0.477456
Target:  5'- gCCGAgGucGCCGAGUCGGCcgaGCGCGGGGCc -3'
miRNA:   3'- -GGUUgC--CGGCUUAGCUG---UGUGUUCCG- -5'
21516 5' -51.3 NC_004812.1 + 53127 0.8 0.506632
Target:  5'- cCCGGCGGCCGAcg-GugGC-CGAGGCg -3'
miRNA:   3'- -GGUUGCCGGCUuagCugUGuGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.