miRNA display CGI

Results 21 - 40 of 971 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21518	3'	-63.1	NC_004812.1	+	89476	0.66	0.664369
	Target:  5'- -gGGCCGaGGUCGUCCGGuacucCGACa-- -3' miRNA:   3'- cgCCGGCgCCGGUAGGCCu----GCUGcgc -5'
21518	3'	-63.1	NC_004812.1	+	42365	0.66	0.664369
	Target:  5'- gGCGGUguuuguCGCGGCCcgaCCGGcgcCGGCGUu -3' miRNA:   3'- -CGCCG------GCGCCGGua-GGCCu--GCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	430	0.66	0.663413
	Target:  5'- cGCGGCgcucucgCGCGcGCCcgCCGcGAgcccgggccgcCGGCGCGc -3' miRNA:   3'- -CGCCG-------GCGC-CGGuaGGC-CU-----------GCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	31331	0.66	0.663413
	Target:  5'- cGCGGCgcucucgCGCGcGCCcgCCGcGAgcccgggccgcCGGCGCGc -3' miRNA:   3'- -CGCCG-------GCGC-CGGuaGGC-CU-----------GCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	148122	0.66	0.663413
	Target:  5'- gGCGGCCGcCGGCCGcucgaucuccaccUCUGG-CGuACcCGg -3' miRNA:   3'- -CGCCGGC-GCCGGU-------------AGGCCuGC-UGcGC- -5'
21518	3'	-63.1	NC_004812.1	+	117221	0.66	0.663413
	Target:  5'- gGCGGCCGcCGGCCGcucgaucuccaccUCUGG-CGuACcCGg -3' miRNA:   3'- -CGCCGGC-GCCGGU-------------AGGCCuGC-UGcGC- -5'
21518	3'	-63.1	NC_004812.1	+	22993	0.66	0.663413
	Target:  5'- gGUGGCCGCcuacGUCGUCguCGGcgcgacaACGGCGCGc -3' miRNA:   3'- -CGCCGGCGc---CGGUAG--GCC-------UGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	141406	0.66	0.663413
	Target:  5'- -aGGCCGCGcGCaaaGUccagcagcgaggcCCGGaggGCGGCGCGc -3' miRNA:   3'- cgCCGGCGC-CGg--UA-------------GGCC---UGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	28002	0.66	0.663413
	Target:  5'- uCGGCgGCGccucccccgccccGCCcgCCuGGAcCGACGCGc -3' miRNA:   3'- cGCCGgCGC-------------CGGuaGG-CCU-GCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	153511	0.66	0.663413
	Target:  5'- uCGGCgGCGccucccccgccccGCCcgCCuGGAcCGACGCGc -3' miRNA:   3'- cGCCGgCGC-------------CGGuaGG-CCU-GCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	27679	0.66	0.661499
	Target:  5'- gGC-GCCGCGuGCCG-CCGGGgcccagccacacgcCGGCGCc -3' miRNA:   3'- -CGcCGGCGC-CGGUaGGCCU--------------GCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	153187	0.66	0.661499
	Target:  5'- gGC-GCCGCGuGCCG-CCGGGgcccagccacacgcCGGCGCc -3' miRNA:   3'- -CGcCGGCGC-CGGUaGGCCU--------------GCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	106555	0.66	0.658626
	Target:  5'- aGCGGgCGCGGUgGUCCacguuaaucgccaggGGGCc-CGCGg -3' miRNA:   3'- -CGCCgGCGCCGgUAGG---------------CCUGcuGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	86397	0.66	0.654794
	Target:  5'- gGCGGCUGCGG--GUCCcGACcGCGCc -3' miRNA:   3'- -CGCCGGCGCCggUAGGcCUGcUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	49149	0.66	0.654794
	Target:  5'- aGCgGGCCcuggggaucgGCGGCgaGUCCGcGACGgccgccGCGCGg -3' miRNA:   3'- -CG-CCGG----------CGCCGg-UAGGC-CUGC------UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	120073	0.66	0.654794
	Target:  5'- aCGGCCGCcguGGCCA-CgGcGGCGGUGCGc -3' miRNA:   3'- cGCCGGCG---CCGGUaGgC-CUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	37256	0.66	0.654794
	Target:  5'- gGCGGCagGCGcGCCGcCCGccaGgGACGCGg -3' miRNA:   3'- -CGCCGg-CGC-CGGUaGGCc--UgCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	146191	0.66	0.654794
	Target:  5'- cGCGGUggaCGCGGggGUCgGGGCGGauCGCGu -3' miRNA:   3'- -CGCCG---GCGCCggUAGgCCUGCU--GCGC- -5'
21518	3'	-63.1	NC_004812.1	+	89000	0.66	0.654794
	Target:  5'- cUGGCCGCGGaCCAcCCGcuuCGGCGa- -3' miRNA:   3'- cGCCGGCGCC-GGUaGGCcu-GCUGCgc -5'
21518	3'	-63.1	NC_004812.1	+	6355	0.66	0.654794
	Target:  5'- gGCGGCagGCGcGCCGcCCGccaGgGACGCGg -3' miRNA:   3'- -CGCCGg-CGC-CGGUaGGCc--UgCUGCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home