miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 5' -58.1 NC_004812.1 + 64372 0.66 0.814166
Target:  5'- -cCGCCCCGCCaggccacacccUCUC---CCGGcCCCg -3'
miRNA:   3'- uuGCGGGGCGG-----------AGAGauaGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 32989 0.66 0.814166
Target:  5'- cGCGUCCUGCCUCcagCggaccUCCGccgCCCg -3'
miRNA:   3'- uUGCGGGGCGGAGa--Gau---AGGCua-GGG- -5'
21518 5' -58.1 NC_004812.1 + 112295 0.66 0.814165
Target:  5'- -cCGCCCCGugcCCUCcCUcUCCGccCCCg -3'
miRNA:   3'- uuGCGGGGC---GGAGaGAuAGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 2088 0.66 0.814165
Target:  5'- cGCGUCCUGCCUCcagCggaccUCCGccgCCCg -3'
miRNA:   3'- uUGCGGGGCGGAGa--Gau---AGGCua-GGG- -5'
21518 5' -58.1 NC_004812.1 + 27918 0.66 0.812449
Target:  5'- cGCGCCgCCGCCUggaugcgCCaGGUCCCg -3'
miRNA:   3'- uUGCGG-GGCGGAgagaua-GG-CUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 40870 0.66 0.805517
Target:  5'- aGGCGCCgcuuUCGCCUCUgUGacUCCGGcgccuugccgugUCCCc -3'
miRNA:   3'- -UUGCGG----GGCGGAGAgAU--AGGCU------------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 10302 0.66 0.805517
Target:  5'- cGACGCCUgagCGCCgUCUgCUG-CCG-UCCCa -3'
miRNA:   3'- -UUGCGGG---GCGG-AGA-GAUaGGCuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 20634 0.66 0.805517
Target:  5'- cGCGCCgcaCCGCCUC-C--UCCGAgagcaggcUCCCg -3'
miRNA:   3'- uUGCGG---GGCGGAGaGauAGGCU--------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 145824 0.66 0.805517
Target:  5'- --gGCCCCGCCggagCgaaggCCGggCCCg -3'
miRNA:   3'- uugCGGGGCGGa---GagauaGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 124775 0.67 0.796716
Target:  5'- cGGCGCUCgGUCUCg----CUGGUCCCg -3'
miRNA:   3'- -UUGCGGGgCGGAGagauaGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 17662 0.67 0.796716
Target:  5'- cGGCGgCUCGCC-CUCU---CGGUCCCg -3'
miRNA:   3'- -UUGCgGGGCGGaGAGAuagGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 110850 0.67 0.796716
Target:  5'- aGACGCCCuCGCCgUCUCcccucgggcUCCGcggagCCCg -3'
miRNA:   3'- -UUGCGGG-GCGG-AGAGau-------AGGCua---GGG- -5'
21518 5' -58.1 NC_004812.1 + 63696 0.67 0.796716
Target:  5'- -cCGCCuCCGCCUCgggAUCCucGA-CCCa -3'
miRNA:   3'- uuGCGG-GGCGGAGagaUAGG--CUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 4013 0.67 0.796715
Target:  5'- -cCGCUCCGCCUC-C--UCCGcGUCCUc -3'
miRNA:   3'- uuGCGGGGCGGAGaGauAGGC-UAGGG- -5'
21518 5' -58.1 NC_004812.1 + 18677 0.67 0.796715
Target:  5'- cGGCGCCcgCCGCCuUCUCgagcccgacUCCGAcggcggagacuaUCCCg -3'
miRNA:   3'- -UUGCGG--GGCGG-AGAGau-------AGGCU------------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 29253 0.67 0.796715
Target:  5'- cACGUuccUCCGCCUCg-UGUUCGAgaUCCCg -3'
miRNA:   3'- uUGCG---GGGCGGAGagAUAGGCU--AGGG- -5'
21518 5' -58.1 NC_004812.1 + 138551 0.67 0.795827
Target:  5'- cACGCCCucgugaaCGCCUCgcugCUGgugCCGGucgucggcUCCCg -3'
miRNA:   3'- uUGCGGG-------GCGGAGa---GAUa--GGCU--------AGGG- -5'
21518 5' -58.1 NC_004812.1 + 21844 0.67 0.787771
Target:  5'- gGGCGUCgCGCC-CUCggcGUCCGAcUCCa -3'
miRNA:   3'- -UUGCGGgGCGGaGAGa--UAGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 27195 0.67 0.787771
Target:  5'- --gGCCCCGCCgccgCgccgCCGcgCCCg -3'
miRNA:   3'- uugCGGGGCGGaga-Gaua-GGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 105166 0.67 0.78777
Target:  5'- uAGCGCCCCGCCUgCgagCgg-CCGcGUgCCu -3'
miRNA:   3'- -UUGCGGGGCGGA-Ga--GauaGGC-UAgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.