miRNA display CGI


Results 41 - 60 of 427 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 49612 0.66 0.947742
Target:  5'- cACGGugGGA---GGGGCGCcCGCGg -3'
miRNA:   3'- cUGUCugCUUguaCCCUGCGuGCGCg -5'
21519 3' -54.3 NC_004812.1 + 150585 0.66 0.951936
Target:  5'- cGGCGGGCuccucGACggGGcGGCGCcgccGCGCGCc -3'
miRNA:   3'- -CUGUCUGc----UUGuaCC-CUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 141482 0.66 0.963143
Target:  5'- --gAGGCGAcGCGgccGGACGCGCGCu- -3'
miRNA:   3'- cugUCUGCU-UGUac-CCUGCGUGCGcg -5'
21519 3' -54.3 NC_004812.1 + 121739 0.66 0.955898
Target:  5'- gGGCcGGCGcGCGgcggGGGGCGC-CGgGCc -3'
miRNA:   3'- -CUGuCUGCuUGUa---CCCUGCGuGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 24856 0.66 0.955898
Target:  5'- cGCGGGCGGcGCGgcugcgGGGGCGUccucgAgGCGCa -3'
miRNA:   3'- cUGUCUGCU-UGUa-----CCCUGCG-----UgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 145131 0.66 0.951936
Target:  5'- --gAGGCGAGCGgcGGGcUGUACGUGUg -3'
miRNA:   3'- cugUCUGCUUGUa-CCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 138819 0.66 0.947742
Target:  5'- uGACGGGcCGGA---GGGACGC-CGCuGCg -3'
miRNA:   3'- -CUGUCU-GCUUguaCCCUGCGuGCG-CG- -5'
21519 3' -54.3 NC_004812.1 + 25076 0.66 0.951936
Target:  5'- cGGCGGGCuccucGACggGGcGGCGCcgccGCGCGCc -3'
miRNA:   3'- -CUGUCUGc----UUGuaCC-CUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 98669 0.66 0.947742
Target:  5'- cGCGGGgguCGAGCc-GGGGCGgGCGCGg -3'
miRNA:   3'- cUGUCU---GCUUGuaCCCUGCgUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 155041 0.66 0.963143
Target:  5'- --gGGGgGGACccGGGcggcuCGCGCGCGUa -3'
miRNA:   3'- cugUCUgCUUGuaCCCu----GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 138234 0.66 0.959632
Target:  5'- --uGGACG-AUGUGGGGCcCGCGgGCc -3'
miRNA:   3'- cugUCUGCuUGUACCCUGcGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 128560 0.66 0.955898
Target:  5'- aGCGcGGCGAGCAggaaGGaGAgGCcgccGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUa---CC-CUgCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 11074 0.66 0.955898
Target:  5'- -cCAGcGCGAACc-GGGGCGC-CGCGa -3'
miRNA:   3'- cuGUC-UGCUUGuaCCCUGCGuGCGCg -5'
21519 3' -54.3 NC_004812.1 + 69601 0.66 0.959632
Target:  5'- cGGCGGugGcccGCggGuGGugGUGCGUGCc -3'
miRNA:   3'- -CUGUCugCu--UGuaC-CCugCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 77840 0.66 0.947742
Target:  5'- -cCAGGCGucCA-GGG-CGC-CGCGCa -3'
miRNA:   3'- cuGUCUGCuuGUaCCCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 112861 0.66 0.951527
Target:  5'- -cCAGACGAaaccggcgccgccGCGaGGGACGgGCG-GCg -3'
miRNA:   3'- cuGUCUGCU-------------UGUaCCCUGCgUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 130398 0.66 0.959632
Target:  5'- cGCGccCGGcCAcGGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUcuGCUuGUaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 101954 0.66 0.955512
Target:  5'- gGGCGG-CGGGCGUcaGGGGcCGCGgacgcccgccgccCGCGCg -3'
miRNA:   3'- -CUGUCuGCUUGUA--CCCU-GCGU-------------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 62256 0.66 0.951936
Target:  5'- -cCAG-CGcGCcgGGGcCGCGcCGCGCg -3'
miRNA:   3'- cuGUCuGCuUGuaCCCuGCGU-GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 66967 0.66 0.947742
Target:  5'- cGGCGauGGCGcACAUGGGGuCGCAgaacaUGUGCu -3'
miRNA:   3'- -CUGU--CUGCuUGUACCCU-GCGU-----GCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.