miRNA display CGI


Results 81 - 100 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 32688 0.66 0.963143
Target:  5'- -cCGGGCcGGCccGGGAcCGCGgGCGCc -3'
miRNA:   3'- cuGUCUGcUUGuaCCCU-GCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 93519 0.66 0.951936
Target:  5'- aGguGACGAAgGccgaggcGGGGCGCGgGUGCg -3'
miRNA:   3'- cUguCUGCUUgUa------CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 46301 0.66 0.955898
Target:  5'- --gAGACG-ACGUacGGGGCggGCACGgGCa -3'
miRNA:   3'- cugUCUGCuUGUA--CCCUG--CGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 3051 0.66 0.955898
Target:  5'- aGCGcGGCGAGCAggaaGGaGAgGCcgccGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUa---CC-CUgCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 10864 0.66 0.963143
Target:  5'- cGACcGACGAGCcccccgacccGcGGGCGCugGaCGCg -3'
miRNA:   3'- -CUGuCUGCUUGua--------C-CCUGCGugC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 82996 0.66 0.947742
Target:  5'- uGGgAGACGGGCGccGGGGCGauccucuuCGUGCa -3'
miRNA:   3'- -CUgUCUGCUUGUa-CCCUGCgu------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 96207 0.67 0.923204
Target:  5'- -cCAGACGcGCGUc-GACGCGCaGCGCa -3'
miRNA:   3'- cuGUCUGCuUGUAccCUGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 26403 0.67 0.941938
Target:  5'- cGACAGcCGcccggGGCucUGGGGCGCGCcggagguggacgagGCGCg -3'
miRNA:   3'- -CUGUCuGC-----UUGu-ACCCUGCGUG--------------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 60849 0.67 0.916998
Target:  5'- cGCAGAgGcGCGUcagguucGGGGCGCGCG-GCu -3'
miRNA:   3'- cUGUCUgCuUGUA-------CCCUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 51543 0.67 0.938646
Target:  5'- cGGCAGACcccaGGcCGUcccGGcGAgCGCACGCGCa -3'
miRNA:   3'- -CUGUCUG----CUuGUA---CC-CU-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 18525 0.67 0.933739
Target:  5'- cGACAGccGCgGAACGaGGcGGCGCAUggcgGCGCg -3'
miRNA:   3'- -CUGUC--UG-CUUGUaCC-CUGCGUG----CGCG- -5'
21519 3' -54.3 NC_004812.1 + 79004 0.67 0.938646
Target:  5'- --aAGGCGcugcuGGCcgGGGACGCcCGCGa -3'
miRNA:   3'- cugUCUGC-----UUGuaCCCUGCGuGCGCg -5'
21519 3' -54.3 NC_004812.1 + 96805 0.67 0.928064
Target:  5'- uGGCGGGCGAACccgcgcguagaggGUGaGGGCGC-CGCc- -3'
miRNA:   3'- -CUGUCUGCUUG-------------UAC-CCUGCGuGCGcg -5'
21519 3' -54.3 NC_004812.1 + 15062 0.67 0.928592
Target:  5'- --gAGGCGGAC-UGGcGGCGaCACGuCGCc -3'
miRNA:   3'- cugUCUGCUUGuACC-CUGC-GUGC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 72050 0.67 0.928592
Target:  5'- gGGCGGG-GggUcgGGGGCGCugGgGg -3'
miRNA:   3'- -CUGUCUgCuuGuaCCCUGCGugCgCg -5'
21519 3' -54.3 NC_004812.1 + 73197 0.67 0.928592
Target:  5'- gGGCGGGCGGGgccGGGACGUccuCGCGg -3'
miRNA:   3'- -CUGUCUGCUUguaCCCUGCGu--GCGCg -5'
21519 3' -54.3 NC_004812.1 + 125599 0.67 0.928592
Target:  5'- -cCGGGCGGGCucccGGcccCGCGCGCGCc -3'
miRNA:   3'- cuGUCUGCUUGua--CCcu-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 140091 0.67 0.938646
Target:  5'- cGguGAUGAGCGcgcccaugGcGGGCGCGCGCaGCa -3'
miRNA:   3'- cUguCUGCUUGUa-------C-CCUGCGUGCG-CG- -5'
21519 3' -54.3 NC_004812.1 + 72609 0.67 0.933739
Target:  5'- aGCAGGCGAGaCAgcgagaaGGGCGCGCcgaggaugguucGCGCg -3'
miRNA:   3'- cUGUCUGCUU-GUac-----CCUGCGUG------------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 27957 0.67 0.917574
Target:  5'- -cCGGAcCGGAUGUGGGACGCGaGC-Ca -3'
miRNA:   3'- cuGUCU-GCUUGUACCCUGCGUgCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.