miRNA display CGI


Results 41 - 60 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 2310 0.75 0.557793
Target:  5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3'
miRNA:   3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 127818 0.75 0.557793
Target:  5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3'
miRNA:   3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 5858 0.74 0.587232
Target:  5'- aGGCGGggggaacaugggcGCGGGCcggGGGGCGCGgGCGCg -3'
miRNA:   3'- -CUGUC-------------UGCUUGua-CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 100349 0.74 0.608732
Target:  5'- cGCGGGCGAggcGCA-GGGGCGCGCcccCGCg -3'
miRNA:   3'- cUGUCUGCU---UGUaCCCUGCGUGc--GCG- -5'
21519 3' -54.3 NC_004812.1 + 110730 0.74 0.607706
Target:  5'- cGGCAGGCGGgagacccucGCGgaggucuUGGGGCGUuacgACGCGCg -3'
miRNA:   3'- -CUGUCUGCU---------UGU-------ACCCUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 16114 0.74 0.608732
Target:  5'- cGCgAGACGAACAcggaccUGGcGACGCAgcUGCGCg -3'
miRNA:   3'- cUG-UCUGCUUGU------ACC-CUGCGU--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 6786 0.74 0.608732
Target:  5'- cGCGGGCGAGCcgugccucggGGGGCGCGcCGgGCg -3'
miRNA:   3'- cUGUCUGCUUGua--------CCCUGCGU-GCgCG- -5'
21519 3' -54.3 NC_004812.1 + 10152 0.74 0.588253
Target:  5'- cGACAGACGGcgACGgggggGGGGCGUuCGCGa -3'
miRNA:   3'- -CUGUCUGCU--UGUa----CCCUGCGuGCGCg -5'
21519 3' -54.3 NC_004812.1 + 37687 0.74 0.608732
Target:  5'- cGCGGGCGAGCcgugccucggGGGGCGCGcCGgGCg -3'
miRNA:   3'- cUGUCUGCUUGua--------CCCUGCGU-GCgCG- -5'
21519 3' -54.3 NC_004812.1 + 36759 0.74 0.587232
Target:  5'- aGGCGGggggaacaugggcGCGGGCcggGGGGCGCGgGCGCg -3'
miRNA:   3'- -CUGUC-------------UGCUUGua-CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 81094 0.74 0.578058
Target:  5'- uGCGGGCGGACGUGcaccGGGCGCugggggGCGUGCc -3'
miRNA:   3'- cUGUCUGCUUGUAC----CCUGCG------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 105869 0.74 0.578058
Target:  5'- gGACGG-CGGGuCGUGGGcgcgcgguGCGCugGCGCu -3'
miRNA:   3'- -CUGUCuGCUU-GUACCC--------UGCGugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30466 0.74 0.629281
Target:  5'- uGACGcuGCGGACGUGGGuCGU-CGCGCa -3'
miRNA:   3'- -CUGUc-UGCUUGUACCCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 20280 0.74 0.623112
Target:  5'- gGACgAGGuCGGGgGUGGGcggcgcgccggcgcaGCGCGCGCGCa -3'
miRNA:   3'- -CUG-UCU-GCUUgUACCC---------------UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122744 0.74 0.619001
Target:  5'- uGCGGGCGGGCGggagaGGGcGCGCACgGUGCg -3'
miRNA:   3'- cUGUCUGCUUGUa----CCC-UGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 78463 0.74 0.588253
Target:  5'- --uGGACGAGggguccauCGUGGGGCGcCugGCGCu -3'
miRNA:   3'- cugUCUGCUU--------GUACCCUGC-GugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122440 0.73 0.649838
Target:  5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3'
miRNA:   3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 46134 0.73 0.649838
Target:  5'- -cCAGcACGAggagguGCAUGGGcCGCAgGCGCu -3'
miRNA:   3'- cuGUC-UGCU------UGUACCCuGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 6335 0.73 0.639562
Target:  5'- gGGCAGGagGGGCAgcagGGGGCGgCAgGCGCg -3'
miRNA:   3'- -CUGUCUg-CUUGUa---CCCUGC-GUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 28667 0.73 0.639562
Target:  5'- gGACuGGCG-GCcgGGGACGCGCuucGCGUg -3'
miRNA:   3'- -CUGuCUGCuUGuaCCCUGCGUG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.