miRNA display CGI


Results 61 - 80 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 139887 0.73 0.648811
Target:  5'- cGACGGGCGAGC--GGGAccggccccgcgguCGCuCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGuaCCCU-------------GCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122440 0.73 0.649838
Target:  5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3'
miRNA:   3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 115377 0.73 0.649838
Target:  5'- cGACAGACGAAgGcGGcGAcCGCAgCGCGUa -3'
miRNA:   3'- -CUGUCUGCUUgUaCC-CU-GCGU-GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 46134 0.73 0.649838
Target:  5'- -cCAGcACGAggagguGCAUGGGcCGCAgGCGCu -3'
miRNA:   3'- cuGUC-UGCU------UGUACCCuGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 153341 0.73 0.649838
Target:  5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3'
miRNA:   3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155917 0.73 0.659075
Target:  5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3'
miRNA:   3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 125016 0.73 0.659075
Target:  5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3'
miRNA:   3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 71387 0.73 0.6601
Target:  5'- gGACGGGCGAgGCggGGGuCGCAgCGgGCg -3'
miRNA:   3'- -CUGUCUGCU-UGuaCCCuGCGU-GCgCG- -5'
21519 3' -54.3 NC_004812.1 + 23393 0.73 0.670339
Target:  5'- cGGCGGGCGAGCGUccGGcGACGgGCGUccgGCg -3'
miRNA:   3'- -CUGUCUGCUUGUA--CC-CUGCgUGCG---CG- -5'
21519 3' -54.3 NC_004812.1 + 36908 0.73 0.670339
Target:  5'- cGGgGGGCGAGgGgaagGGGACGCgggcagcgacuGCGCGCc -3'
miRNA:   3'- -CUgUCUGCUUgUa---CCCUGCG-----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130536 0.73 0.670339
Target:  5'- aGGCcGACGAccccggGCcgGGGGCGCGCgaggGCGCc -3'
miRNA:   3'- -CUGuCUGCU------UGuaCCCUGCGUG----CGCG- -5'
21519 3' -54.3 NC_004812.1 + 85136 0.73 0.670339
Target:  5'- gGGCGcGCGGGCG-GGGGCGCgccuggACGCGCu -3'
miRNA:   3'- -CUGUcUGCUUGUaCCCUGCG------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 148901 0.73 0.670339
Target:  5'- cGGCGGGCGAGCGUccGGcGACGgGCGUccgGCg -3'
miRNA:   3'- -CUGUCUGCUUGUA--CC-CUGCgUGCG---CG- -5'
21519 3' -54.3 NC_004812.1 + 5027 0.73 0.670339
Target:  5'- aGGCcGACGAccccggGCcgGGGGCGCGCgaggGCGCc -3'
miRNA:   3'- -CUGuCUGCU------UGuaCCCUGCGUG----CGCG- -5'
21519 3' -54.3 NC_004812.1 + 89252 0.73 0.670339
Target:  5'- cACGGuguCGcaGGCGUGGGACGCGCaggccgcgGCGCg -3'
miRNA:   3'- cUGUCu--GC--UUGUACCCUGCGUG--------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 154803 0.73 0.680546
Target:  5'- aGGCgAGGCGcGCAgccGGGGCccgauGCACGCGCu -3'
miRNA:   3'- -CUG-UCUGCuUGUa--CCCUG-----CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 143209 0.73 0.680546
Target:  5'- -cCAGGaccaGGACGccGGGCGCGCGCGCc -3'
miRNA:   3'- cuGUCUg---CUUGUacCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29295 0.73 0.680546
Target:  5'- aGGCgAGGCGcGCAgccGGGGCccgauGCACGCGCu -3'
miRNA:   3'- -CUG-UCUGCuUGUa--CCCUG-----CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 127854 0.72 0.690714
Target:  5'- cGCGGGCGGcaggGCGUcGGGCccgGCGCGCGCg -3'
miRNA:   3'- cUGUCUGCU----UGUAcCCUG---CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 43624 0.72 0.690714
Target:  5'- gGGCAGGgGGGCGUGGGucaccacguaGCugGCGUu -3'
miRNA:   3'- -CUGUCUgCUUGUACCCug--------CGugCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.