miRNA display CGI


Results 81 - 100 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 2346 0.72 0.690714
Target:  5'- cGCGGGCGGcaggGCGUcGGGCccgGCGCGCGCg -3'
miRNA:   3'- cUGUCUGCU----UGUAcCCUG---CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 82152 0.72 0.690714
Target:  5'- gGGCGGugGAcgaGUuccGGGGCGCGCGgGCc -3'
miRNA:   3'- -CUGUCugCUug-UA---CCCUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 43624 0.72 0.690714
Target:  5'- gGGCAGGgGGGCGUGGGucaccacguaGCugGCGUu -3'
miRNA:   3'- -CUGUCUgCUUGUACCCug--------CGugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 18089 0.72 0.699823
Target:  5'- uGGgGGGCGAGCcgucgugguacguGUGGGAguagcggcCGCACGUGCu -3'
miRNA:   3'- -CUgUCUGCUUG-------------UACCCU--------GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 136457 0.72 0.700832
Target:  5'- cGCAGGCGAauccGCGcgGGGGCGCcAUGgGCg -3'
miRNA:   3'- cUGUCUGCU----UGUa-CCCUGCG-UGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 66637 0.72 0.700832
Target:  5'- cACGGGCGAagcgggaggcGCGUcGGGAgGCGCGcCGCc -3'
miRNA:   3'- cUGUCUGCU----------UGUA-CCCUgCGUGC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 96777 0.72 0.700832
Target:  5'- cACGGGCGAGCAucUGGcGAUGC-UGUGCg -3'
miRNA:   3'- cUGUCUGCUUGU--ACC-CUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 35924 0.72 0.700832
Target:  5'- cGGCAGugGGGCGgcaggcGGGGCaGCGC-CGCg -3'
miRNA:   3'- -CUGUCugCUUGUa-----CCCUG-CGUGcGCG- -5'
21519 3' -54.3 NC_004812.1 + 13961 0.72 0.709889
Target:  5'- cGCAGACcAACA-GGGGCGCAgcccggcCGCGUa -3'
miRNA:   3'- cUGUCUGcUUGUaCCCUGCGU-------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 6006 0.72 0.720884
Target:  5'- cGGgGGGCGAGgGgaaggGGGACGCgggcagcgacuGCGCGCc -3'
miRNA:   3'- -CUgUCUGCUUgUa----CCCUGCG-----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 138291 0.72 0.72486
Target:  5'- uGCGGGCGGugGUcgcggcgggcucggaGGGugGCGCcgGCGCg -3'
miRNA:   3'- cUGUCUGCUugUA---------------CCCugCGUG--CGCG- -5'
21519 3' -54.3 NC_004812.1 + 70037 0.72 0.727834
Target:  5'- gGACAGGCGGGggcgcucgccgaccUGUGcaGGGCGCACGCGa -3'
miRNA:   3'- -CUGUCUGCUU--------------GUAC--CCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 91285 0.72 0.7308
Target:  5'- cGGCAGugGAuCGUGGGGauguaGCAgGgGCu -3'
miRNA:   3'- -CUGUCugCUuGUACCCUg----CGUgCgCG- -5'
21519 3' -54.3 NC_004812.1 + 80525 0.72 0.7308
Target:  5'- uGGCGGagaagcucGCGGACc-GGGACGCcCGCGCc -3'
miRNA:   3'- -CUGUC--------UGCUUGuaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 94329 0.72 0.7308
Target:  5'- cGGCGG-UGAccGCGUGGGucuccGCGCGCgGCGCg -3'
miRNA:   3'- -CUGUCuGCU--UGUACCC-----UGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 17771 0.72 0.73769
Target:  5'- --uGGGCGGGCGUGGGggcgagaacgggguGgGUGCGCGCa -3'
miRNA:   3'- cugUCUGCUUGUACCC--------------UgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 91079 0.72 0.740629
Target:  5'- aGACcggGGGCGAGgG-GGGGCGCcagggGCGCGCc -3'
miRNA:   3'- -CUG---UCUGCUUgUaCCCUGCG-----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 71896 0.72 0.740629
Target:  5'- cGACGG-CGGGCcgGGcGGCGCG-GCGCc -3'
miRNA:   3'- -CUGUCuGCUUGuaCC-CUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128603 0.72 0.740629
Target:  5'- aGGCGGGCgGGGCggGGGAgGCGC-CGCc -3'
miRNA:   3'- -CUGUCUG-CUUGuaCCCUgCGUGcGCG- -5'
21519 3' -54.3 NC_004812.1 + 64139 0.72 0.740629
Target:  5'- cGCGGACGcGAUcgGGGACGgCG-GCGCg -3'
miRNA:   3'- cUGUCUGC-UUGuaCCCUGC-GUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.