Results 61 - 80 of 427 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21519 | 3' | -54.3 | NC_004812.1 | + | 134872 | 0.66 | 0.951936 |
Target: 5'- cGGC-GACGucaccACGUGGGGCGaguacCGCGUg -3' miRNA: 3'- -CUGuCUGCu----UGUACCCUGCgu---GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 62256 | 0.66 | 0.951936 |
Target: 5'- -cCAG-CGcGCcgGGGcCGCGcCGCGCg -3' miRNA: 3'- cuGUCuGCuUGuaCCCuGCGU-GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 109085 | 0.66 | 0.951936 |
Target: 5'- cGACAGGCccugGAGCGUGcGGACGgugGCG-GCg -3' miRNA: 3'- -CUGUCUG----CUUGUAC-CCUGCg--UGCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 15022 | 0.66 | 0.951936 |
Target: 5'- gGGCAGGCGccCAgGGGccgguCGUACGgGCa -3' miRNA: 3'- -CUGUCUGCuuGUaCCCu----GCGUGCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 150585 | 0.66 | 0.951936 |
Target: 5'- cGGCGGGCuccucGACggGGcGGCGCcgccGCGCGCc -3' miRNA: 3'- -CUGUCUGc----UUGuaCC-CUGCG----UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 95532 | 0.66 | 0.951936 |
Target: 5'- cGGCgGGGCG-GCccGGGGCGU-CGCGCc -3' miRNA: 3'- -CUG-UCUGCuUGuaCCCUGCGuGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 6682 | 0.66 | 0.951936 |
Target: 5'- gGAUGGACG-ACAgGGGGCGUGUGUGUu -3' miRNA: 3'- -CUGUCUGCuUGUaCCCUGCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 145131 | 0.66 | 0.951936 |
Target: 5'- --gAGGCGAGCGgcGGGcUGUACGUGUg -3' miRNA: 3'- cugUCUGCUUGUa-CCCuGCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 112861 | 0.66 | 0.951527 |
Target: 5'- -cCAGACGAaaccggcgccgccGCGaGGGACGgGCG-GCg -3' miRNA: 3'- cuGUCUGCU-------------UGUaCCCUGCgUGCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 78933 | 0.66 | 0.950286 |
Target: 5'- gGGCcGACGGGCAgaaggccguggagGGGGCG-ACGCGg -3' miRNA: 3'- -CUGuCUGCUUGUa------------CCCUGCgUGCGCg -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 132945 | 0.66 | 0.947742 |
Target: 5'- -cUAGGCG-ACcgGGGACGC-CGCc- -3' miRNA: 3'- cuGUCUGCuUGuaCCCUGCGuGCGcg -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 108658 | 0.66 | 0.947742 |
Target: 5'- cGGCAGGgaGGAUccGGGaACGCGCGC-Cg -3' miRNA: 3'- -CUGUCUg-CUUGuaCCC-UGCGUGCGcG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 138819 | 0.66 | 0.947742 |
Target: 5'- uGACGGGcCGGA---GGGACGC-CGCuGCg -3' miRNA: 3'- -CUGUCU-GCUUguaCCCUGCGuGCG-CG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 24050 | 0.66 | 0.947742 |
Target: 5'- -cUAGGCG-ACggGGGACGCcgccccuCGCGUc -3' miRNA: 3'- cuGUCUGCuUGuaCCCUGCGu------GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 107978 | 0.66 | 0.947742 |
Target: 5'- gGAUAGAgaGGCG-GGGcguuccCGCACGCGCg -3' miRNA: 3'- -CUGUCUgcUUGUaCCCu-----GCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 77840 | 0.66 | 0.947742 |
Target: 5'- -cCAGGCGucCA-GGG-CGC-CGCGCa -3' miRNA: 3'- cuGUCUGCuuGUaCCCuGCGuGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 98669 | 0.66 | 0.947742 |
Target: 5'- cGCGGGgguCGAGCc-GGGGCGgGCGCGg -3' miRNA: 3'- cUGUCU---GCUUGuaCCCUGCgUGCGCg -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 149559 | 0.66 | 0.947742 |
Target: 5'- -cUAGGCG-ACggGGGACGCcgccccuCGCGUc -3' miRNA: 3'- cuGUCUGCuUGuaCCCUGCGu------GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 41732 | 0.66 | 0.947742 |
Target: 5'- cGGCguGGugGuGACG-GGGGUGCGCGUGCg -3' miRNA: 3'- -CUG--UCugC-UUGUaCCCUGCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 37584 | 0.66 | 0.947742 |
Target: 5'- -gUAGACGGGCcgGuGGcCGCcCGCGUu -3' miRNA: 3'- cuGUCUGCUUGuaC-CCuGCGuGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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