miRNA display CGI


Results 41 - 60 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 11588 0.67 0.923204
Target:  5'- -cCGGGgGGGa--GGGACGC-CGCGCg -3'
miRNA:   3'- cuGUCUgCUUguaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 11970 0.71 0.769506
Target:  5'- cGCAGACuc-CccGGGACGCgaugGCGCGCg -3'
miRNA:   3'- cUGUCUGcuuGuaCCCUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 12125 0.68 0.905595
Target:  5'- -uCGGGgGggUugGGGGCGCGCgGCGCc -3'
miRNA:   3'- cuGUCUgCuuGuaCCCUGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 12274 0.69 0.864092
Target:  5'- cGAC-GACGugguccgcGACAUGGccACGUACGCGCu -3'
miRNA:   3'- -CUGuCUGC--------UUGUACCc-UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 13197 0.68 0.911104
Target:  5'- cGCAGACGAugAUgcacgccGGGAUgGCGaucUGCGCg -3'
miRNA:   3'- cUGUCUGCUugUA-------CCCUG-CGU---GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 13961 0.72 0.709889
Target:  5'- cGCAGACcAACA-GGGGCGCAgcccggcCGCGUa -3'
miRNA:   3'- cUGUCUGcUUGUaCCCUGCGU-------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 14098 0.7 0.832147
Target:  5'- uGCGGGUGAACGcgGGGAgCGCGcCGUGCg -3'
miRNA:   3'- cUGUCUGCUUGUa-CCCU-GCGU-GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 15022 0.66 0.951936
Target:  5'- gGGCAGGCGccCAgGGGccgguCGUACGgGCa -3'
miRNA:   3'- -CUGUCUGCuuGUaCCCu----GCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 15062 0.67 0.928592
Target:  5'- --gAGGCGGAC-UGGcGGCGaCACGuCGCc -3'
miRNA:   3'- cugUCUGCUUGuACC-CUGC-GUGC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 15919 0.77 0.460445
Target:  5'- cGGCGGGCGGGgGUGGGGuCGCggggucACGCGUa -3'
miRNA:   3'- -CUGUCUGCUUgUACCCU-GCG------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 15953 0.69 0.878824
Target:  5'- aGACguAGGCGGcGCGUGGcGcCGC-CGCGCg -3'
miRNA:   3'- -CUG--UCUGCU-UGUACC-CuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 16114 0.74 0.608732
Target:  5'- cGCgAGACGAACAcggaccUGGcGACGCAgcUGCGCg -3'
miRNA:   3'- cUG-UCUGCUUGU------ACC-CUGCGU--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 16204 0.68 0.892671
Target:  5'- cGCGcGGCGGACccGGGcCGCGCGC-Cg -3'
miRNA:   3'- cUGU-CUGCUUGuaCCCuGCGUGCGcG- -5'
21519 3' -54.3 NC_004812.1 + 16309 0.69 0.861808
Target:  5'- uGGCGGACGAGCGggggcggagaccgaUGGGuCGgGagaaGCGCu -3'
miRNA:   3'- -CUGUCUGCUUGU--------------ACCCuGCgUg---CGCG- -5'
21519 3' -54.3 NC_004812.1 + 16565 0.67 0.922652
Target:  5'- --aGGAgGAGCuGUGGGAgGCgauuuuuaagaaaACGCGCg -3'
miRNA:   3'- cugUCUgCUUG-UACCCUgCG-------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 17771 0.72 0.73769
Target:  5'- --uGGGCGGGCGUGGGggcgagaacgggguGgGUGCGCGCa -3'
miRNA:   3'- cugUCUGCUUGUACCC--------------UgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 18089 0.72 0.699823
Target:  5'- uGGgGGGCGAGCcgucgugguacguGUGGGAguagcggcCGCACGUGCu -3'
miRNA:   3'- -CUgUCUGCUUG-------------UACCCU--------GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 18407 0.69 0.848515
Target:  5'- gGACGG-CGuAGCAguacgcUGGGuCGCGCGCGg -3'
miRNA:   3'- -CUGUCuGC-UUGU------ACCCuGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 18452 0.68 0.911704
Target:  5'- -cCGGugGcGCGgcgggGGGGCGCGgcccCGCGCc -3'
miRNA:   3'- cuGUCugCuUGUa----CCCUGCGU----GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 18525 0.67 0.933739
Target:  5'- cGACAGccGCgGAACGaGGcGGCGCAUggcgGCGCg -3'
miRNA:   3'- -CUGUC--UG-CUUGUaCC-CUGCGUG----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.