miRNA display CGI


Results 61 - 80 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 18706 0.72 0.740629
Target:  5'- cGGCAGcCGcaguagcuccgcGGCGcUGGGGCGC-CGCGCg -3'
miRNA:   3'- -CUGUCuGC------------UUGU-ACCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 19889 0.69 0.848515
Target:  5'- cGGCGcGGCG-GCggGGGACGCGgcggccCGCGCc -3'
miRNA:   3'- -CUGU-CUGCuUGuaCCCUGCGU------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 20186 0.69 0.85406
Target:  5'- -cCGGGCGAGCGggcgcgucuucgagaGGACGCACGUGg -3'
miRNA:   3'- cuGUCUGCUUGUac-------------CCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 20280 0.74 0.623112
Target:  5'- gGACgAGGuCGGGgGUGGGcggcgcgccggcgcaGCGCGCGCGCa -3'
miRNA:   3'- -CUG-UCU-GCUUgUACCC---------------UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 20583 0.66 0.959632
Target:  5'- -cCAGAcCGGACcgGccgguggcgaGGACGCGCGCcuGCg -3'
miRNA:   3'- cuGUCU-GCUUGuaC----------CCUGCGUGCG--CG- -5'
21519 3' -54.3 NC_004812.1 + 21023 0.68 0.892671
Target:  5'- cGCGGGgGuGCAUgGGGugGC-UGCGCg -3'
miRNA:   3'- cUGUCUgCuUGUA-CCCugCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 21153 0.69 0.864092
Target:  5'- cGGCGGGgGucucGGCGUgccgcGGGACGCcgagGCGCGCg -3'
miRNA:   3'- -CUGUCUgC----UUGUA-----CCCUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 22117 0.7 0.806238
Target:  5'- uGGC-GAUGAuCcgGGGGCaCGCGCGCa -3'
miRNA:   3'- -CUGuCUGCUuGuaCCCUGcGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 22159 0.7 0.815045
Target:  5'- cGCAGGCGGu--UGGcGGCGC-CGUGCg -3'
miRNA:   3'- cUGUCUGCUuguACC-CUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 23393 0.73 0.670339
Target:  5'- cGGCGGGCGAGCGUccGGcGACGgGCGUccgGCg -3'
miRNA:   3'- -CUGUCUGCUUGUA--CC-CUGCgUGCG---CG- -5'
21519 3' -54.3 NC_004812.1 + 23434 0.7 0.832147
Target:  5'- cGAC-GACGGugGUcGGGGCGCGagaGCGg -3'
miRNA:   3'- -CUGuCUGCUugUA-CCCUGCGUg--CGCg -5'
21519 3' -54.3 NC_004812.1 + 24050 0.66 0.947742
Target:  5'- -cUAGGCG-ACggGGGACGCcgccccuCGCGUc -3'
miRNA:   3'- cuGUCUGCuUGuaCCCUGCGu------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 24856 0.66 0.955898
Target:  5'- cGCGGGCGGcGCGgcugcgGGGGCGUccucgAgGCGCa -3'
miRNA:   3'- cUGUCUGCU-UGUa-----CCCUGCG-----UgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 25076 0.66 0.951936
Target:  5'- cGGCGGGCuccucGACggGGcGGCGCcgccGCGCGCc -3'
miRNA:   3'- -CUGUCUGc----UUGuaCC-CUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 25579 0.67 0.917574
Target:  5'- cGACGGGgaGGACGgcgGGGACGCcuucccCGCGg -3'
miRNA:   3'- -CUGUCUg-CUUGUa--CCCUGCGu-----GCGCg -5'
21519 3' -54.3 NC_004812.1 + 26037 0.71 0.76856
Target:  5'- cGGCGGGgccgGGGCcgGGGGCGCGgcgcccuCGCGCg -3'
miRNA:   3'- -CUGUCUg---CUUGuaCCCUGCGU-------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 26187 0.66 0.963143
Target:  5'- -cCGGGCG-ACG-GGGGCG-GCGCGUa -3'
miRNA:   3'- cuGUCUGCuUGUaCCCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 26194 0.76 0.488791
Target:  5'- cGCAG-CGAGC--GGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUCuGCUUGuaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 26240 0.68 0.904972
Target:  5'- cGAgGGGCcggucuccgaccgGGACucggGGGACGCGgcCGCGCg -3'
miRNA:   3'- -CUgUCUG-------------CUUGua--CCCUGCGU--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 26403 0.67 0.941938
Target:  5'- cGACAGcCGcccggGGCucUGGGGCGCGCcggagguggacgagGCGCg -3'
miRNA:   3'- -CUGUCuGC-----UUGu-ACCCUGCGUG--------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.