miRNA display CGI


Results 81 - 100 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 27210 0.67 0.943313
Target:  5'- cGACGcGGCGucagcguccAGCGUGaccaGGAUGUugGCGCa -3'
miRNA:   3'- -CUGU-CUGC---------UUGUAC----CCUGCGugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 27461 0.69 0.878824
Target:  5'- cGCAGACGcg---GGcGGCGC-CGCGCg -3'
miRNA:   3'- cUGUCUGCuuguaCC-CUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 27719 0.68 0.885861
Target:  5'- gGACGGACGAGgGggggcGGGGgGC-CGCGg -3'
miRNA:   3'- -CUGUCUGCUUgUa----CCCUgCGuGCGCg -5'
21519 3' -54.3 NC_004812.1 + 27957 0.67 0.917574
Target:  5'- -cCGGAcCGGAUGUGGGACGCGaGC-Ca -3'
miRNA:   3'- cuGUCU-GCUUGUACCCUGCGUgCGcG- -5'
21519 3' -54.3 NC_004812.1 + 28667 0.73 0.639562
Target:  5'- gGACuGGCG-GCcgGGGACGCGCuucGCGUg -3'
miRNA:   3'- -CUGuCUGCuUGuaCCCUGCGUG---CGCG- -5'
21519 3' -54.3 NC_004812.1 + 29146 0.69 0.848515
Target:  5'- cACGGGCGGuccCAcGGGACGCugGaGCc -3'
miRNA:   3'- cUGUCUGCUu--GUaCCCUGCGugCgCG- -5'
21519 3' -54.3 NC_004812.1 + 29243 0.67 0.917574
Target:  5'- cGCGGAgGAGCGggccGGGGCuGCGCGgGg -3'
miRNA:   3'- cUGUCUgCUUGUa---CCCUG-CGUGCgCg -5'
21519 3' -54.3 NC_004812.1 + 29295 0.73 0.680546
Target:  5'- aGGCgAGGCGcGCAgccGGGGCccgauGCACGCGCu -3'
miRNA:   3'- -CUG-UCUGCuUGUa--CCCUG-----CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29462 0.8 0.297278
Target:  5'- gGACGGGCGGGCcgcgcGGGACcCGCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGua---CCCUGcGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29533 0.66 0.963143
Target:  5'- --gGGGgGGACccGGGcggcuCGCGCGCGUa -3'
miRNA:   3'- cugUCUgCUUGuaCCCu----GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29762 0.69 0.856406
Target:  5'- cGGCGGACGccaAACcgGGGAgGgGCgggGCGCg -3'
miRNA:   3'- -CUGUCUGC---UUGuaCCCUgCgUG---CGCG- -5'
21519 3' -54.3 NC_004812.1 + 29780 0.67 0.943313
Target:  5'- cACGGGCGAugGUcGGGCaGCugGUGg -3'
miRNA:   3'- cUGUCUGCUugUAcCCUG-CGugCGCg -5'
21519 3' -54.3 NC_004812.1 + 29809 0.69 0.878824
Target:  5'- aACAGACGGcucGCGUacGACGagaGCGCGCa -3'
miRNA:   3'- cUGUCUGCU---UGUAccCUGCg--UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29933 0.66 0.959632
Target:  5'- cGACGGcGCGAgggaGCggGGGGCcggGCuCGCGCc -3'
miRNA:   3'- -CUGUC-UGCU----UGuaCCCUG---CGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 29943 0.71 0.759991
Target:  5'- aGCAGcACGAcgGCGUcgacGGGGCGCGCGaacaGCa -3'
miRNA:   3'- cUGUC-UGCU--UGUA----CCCUGCGUGCg---CG- -5'
21519 3' -54.3 NC_004812.1 + 30049 0.75 0.537734
Target:  5'- gGGCGGGgGAGgGgggaGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUgCUUgUa---CCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 30106 0.7 0.806238
Target:  5'- cGGC-GugGGGCugcGGGGCGCACGUcccGCa -3'
miRNA:   3'- -CUGuCugCUUGua-CCCUGCGUGCG---CG- -5'
21519 3' -54.3 NC_004812.1 + 30214 0.81 0.25794
Target:  5'- gGGgGGugGGGgGUGGGGgGCGCGCGCg -3'
miRNA:   3'- -CUgUCugCUUgUACCCUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30466 0.74 0.629281
Target:  5'- uGACGcuGCGGACGUGGGuCGU-CGCGCa -3'
miRNA:   3'- -CUGUc-UGCUUGUACCCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30544 0.69 0.871566
Target:  5'- gGACGGGCGGGCGUcGcGcGGCGCGuCGcCGCc -3'
miRNA:   3'- -CUGUCUGCUUGUA-C-C-CUGCGU-GC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.