miRNA display CGI


Results 21 - 40 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 153645 0.75 0.537734
Target:  5'- uGCGGGCGGGCG-GGGAgaGgGCGCGCa -3'
miRNA:   3'- cUGUCUGCUUGUaCCCUg-CgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 153341 0.73 0.649838
Target:  5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3'
miRNA:   3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 153157 0.68 0.901817
Target:  5'- cGCGGGCGGggggccacggggaccACggGGGGCGCgGCgGCGCc -3'
miRNA:   3'- cUGUCUGCU---------------UGuaCCCUGCG-UG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 152969 0.69 0.878824
Target:  5'- cGCAGACGcg---GGcGGCGC-CGCGCg -3'
miRNA:   3'- cUGUCUGCuuguaCC-CUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 152203 0.7 0.81242
Target:  5'- gGGCAGGCGAGugcggcgggaccacCcgGGcGACGCcucggccaggGCGCGCg -3'
miRNA:   3'- -CUGUCUGCUU--------------GuaCC-CUGCG----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 151914 0.77 0.421396
Target:  5'- cGCGcGGCGGGCcgGGGGCGCuccccucggcgccgGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGuaCCCUGCG--------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 151911 0.67 0.941938
Target:  5'- cGACAGcCGcccggGGCucUGGGGCGCGCcggagguggacgagGCGCg -3'
miRNA:   3'- -CUGUCuGC-----UUGu-ACCCUGCGUG--------------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 151702 0.76 0.488791
Target:  5'- cGCAG-CGAGC--GGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUCuGCUUGuaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 151546 0.71 0.76856
Target:  5'- cGGCGGGgccgGGGCcgGGGGCGCGgcgcccuCGCGCg -3'
miRNA:   3'- -CUGUCUg---CUUGuaCCCUGCGU-------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 151087 0.67 0.917574
Target:  5'- cGACGGGgaGGACGgcgGGGACGCcuucccCGCGg -3'
miRNA:   3'- -CUGUCUg-CUUGUa--CCCUGCGu-----GCGCg -5'
21519 3' -54.3 NC_004812.1 + 150585 0.66 0.951936
Target:  5'- cGGCGGGCuccucGACggGGcGGCGCcgccGCGCGCc -3'
miRNA:   3'- -CUGUCUGc----UUGuaCC-CUGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 149559 0.66 0.947742
Target:  5'- -cUAGGCG-ACggGGGACGCcgccccuCGCGUc -3'
miRNA:   3'- cuGUCUGCuUGuaCCCUGCGu------GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 148942 0.7 0.832147
Target:  5'- cGAC-GACGGugGUcGGGGCGCGagaGCGg -3'
miRNA:   3'- -CUGuCUGCUugUA-CCCUGCGUg--CGCg -5'
21519 3' -54.3 NC_004812.1 + 148901 0.73 0.670339
Target:  5'- cGGCGGGCGAGCGUccGGcGACGgGCGUccgGCg -3'
miRNA:   3'- -CUGUCUGCUUGUA--CC-CUGCgUGCG---CG- -5'
21519 3' -54.3 NC_004812.1 + 148240 0.7 0.823684
Target:  5'- cGGCgGGGgGAGCAgGGGGCGUucgggAUGCGCg -3'
miRNA:   3'- -CUG-UCUgCUUGUaCCCUGCG-----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 147112 0.69 0.871566
Target:  5'- cGGCGucGACGcAACccgggGGGACGgGCGUGCu -3'
miRNA:   3'- -CUGU--CUGC-UUGua---CCCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 146964 0.66 0.963143
Target:  5'- -cCGGGCGGGgugggaGUGGG-CGCugGgGCg -3'
miRNA:   3'- cuGUCUGCUUg-----UACCCuGCGugCgCG- -5'
21519 3' -54.3 NC_004812.1 + 145724 0.79 0.333495
Target:  5'- uGACGGACGcccgaacgcggcGACccGGGGCGCGCGgGCg -3'
miRNA:   3'- -CUGUCUGC------------UUGuaCCCUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 145606 0.66 0.963143
Target:  5'- gGGCgaAGGCGGACccGUGGucCGCcgggGCGCGCc -3'
miRNA:   3'- -CUG--UCUGCUUG--UACCcuGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 145131 0.66 0.951936
Target:  5'- --gAGGCGAGCGgcGGGcUGUACGUGUg -3'
miRNA:   3'- cugUCUGCUUGUa-CCCuGCGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.