miRNA display CGI


Results 41 - 60 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 143926 0.68 0.911704
Target:  5'- gGugGGugGGuuGCGUGGGAgGUggGgGCg -3'
miRNA:   3'- -CugUCugCU--UGUACCCUgCGugCgCG- -5'
21519 3' -54.3 NC_004812.1 + 143620 0.66 0.955512
Target:  5'- cGGCGGcgagagcGCGAGCGcggccccGGGCGCggaGCGCGCg -3'
miRNA:   3'- -CUGUC-------UGCUUGUac-----CCUGCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 143508 0.69 0.840427
Target:  5'- cGGCgAGGCGGGCccGGG-CGUACgaGCGCa -3'
miRNA:   3'- -CUG-UCUGCUUGuaCCCuGCGUG--CGCG- -5'
21519 3' -54.3 NC_004812.1 + 143209 0.73 0.680546
Target:  5'- -cCAGGaccaGGACGccGGGCGCGCGCGCc -3'
miRNA:   3'- cuGUCUg---CUUGUacCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 141772 0.68 0.885861
Target:  5'- gGGCGGcguCGAACGgccgcgcgggGGGGCGgGcCGCGCg -3'
miRNA:   3'- -CUGUCu--GCUUGUa---------CCCUGCgU-GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 141664 0.68 0.898603
Target:  5'- cGAC-GACG-ACcUGGGccucgucAUGCACGCGCc -3'
miRNA:   3'- -CUGuCUGCuUGuACCC-------UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 141482 0.66 0.963143
Target:  5'- --gAGGCGAcGCGgccGGACGCGCGCu- -3'
miRNA:   3'- cugUCUGCU-UGUac-CCUGCGUGCGcg -5'
21519 3' -54.3 NC_004812.1 + 141213 0.66 0.955898
Target:  5'- ---cGGCGGGCG-GGGGCgaGUACGUGCc -3'
miRNA:   3'- cuguCUGCUUGUaCCCUG--CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 140950 0.69 0.871566
Target:  5'- cGGCAGACGcgGGCGUGcu-CGCggaGCGCGCg -3'
miRNA:   3'- -CUGUCUGC--UUGUACccuGCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 140865 0.76 0.517929
Target:  5'- cGCAGGCGcGCAaggcgcgggggUGGGugGCgggACGCGCg -3'
miRNA:   3'- cUGUCUGCuUGU-----------ACCCugCG---UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 140091 0.67 0.938646
Target:  5'- cGguGAUGAGCGcgcccaugGcGGGCGCGCGCaGCa -3'
miRNA:   3'- cUguCUGCUUGUa-------C-CCUGCGUGCG-CG- -5'
21519 3' -54.3 NC_004812.1 + 139887 0.73 0.648811
Target:  5'- cGACGGGCGAGC--GGGAccggccccgcgguCGCuCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGuaCCCU-------------GCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 139451 0.68 0.905595
Target:  5'- cGAUGGGgGAGCAccaggggcGGGACGCACaggcuGUGCa -3'
miRNA:   3'- -CUGUCUgCUUGUa-------CCCUGCGUG-----CGCG- -5'
21519 3' -54.3 NC_004812.1 + 138819 0.66 0.947742
Target:  5'- uGACGGGcCGGA---GGGACGC-CGCuGCg -3'
miRNA:   3'- -CUGUCU-GCUUguaCCCUGCGuGCG-CG- -5'
21519 3' -54.3 NC_004812.1 + 138374 0.72 0.740629
Target:  5'- --gGGACGGGCggGGGcGCGUACGcCGCc -3'
miRNA:   3'- cugUCUGCUUGuaCCC-UGCGUGC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 138291 0.72 0.72486
Target:  5'- uGCGGGCGGugGUcgcggcgggcucggaGGGugGCGCcgGCGCg -3'
miRNA:   3'- cUGUCUGCUugUA---------------CCCugCGUG--CGCG- -5'
21519 3' -54.3 NC_004812.1 + 138234 0.66 0.959632
Target:  5'- --uGGACG-AUGUGGGGCcCGCGgGCc -3'
miRNA:   3'- cugUCUGCuUGUACCCUGcGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 136457 0.72 0.700832
Target:  5'- cGCAGGCGAauccGCGcgGGGGCGCcAUGgGCg -3'
miRNA:   3'- cUGUCUGCU----UGUa-CCCUGCG-UGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 136283 0.7 0.797272
Target:  5'- uGCGcGCGcccGCGUGGGggcggugccuGCGCGCGCGCu -3'
miRNA:   3'- cUGUcUGCu--UGUACCC----------UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 135889 0.7 0.815045
Target:  5'- uACAGACGGGgGcgGGGGCGCgGCuCGCa -3'
miRNA:   3'- cUGUCUGCUUgUa-CCCUGCG-UGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.