miRNA display CGI


Results 61 - 80 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 135803 0.7 0.823684
Target:  5'- uGACgAGGCGGGCGcc-GACGCGgGCGCg -3'
miRNA:   3'- -CUG-UCUGCUUGUaccCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 135590 0.76 0.488791
Target:  5'- cGCGGccucaACGGcCcgGUGGGGCGCACGCGCu -3'
miRNA:   3'- cUGUC-----UGCUuG--UACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 134872 0.66 0.951936
Target:  5'- cGGC-GACGucaccACGUGGGGCGaguacCGCGUg -3'
miRNA:   3'- -CUGuCUGCu----UGUACCCUGCgu---GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 133531 0.66 0.955898
Target:  5'- aGCAG-CGucGCGUGGGugGCcaccauGCGgGCc -3'
miRNA:   3'- cUGUCuGCu-UGUACCCugCG------UGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 132945 0.66 0.947742
Target:  5'- -cUAGGCG-ACcgGGGACGC-CGCc- -3'
miRNA:   3'- cuGUCUGCuUGuaCCCUGCGuGCGcg -5'
21519 3' -54.3 NC_004812.1 + 132811 0.72 0.740629
Target:  5'- cGCGcGGCGcGCAUGGaGccGCGCACGCGUc -3'
miRNA:   3'- cUGU-CUGCuUGUACC-C--UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 131398 0.71 0.749394
Target:  5'- cGugAG-CGAGCAcgcguccUGGGcggACGUGCGCGCg -3'
miRNA:   3'- -CugUCuGCUUGU-------ACCC---UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130955 0.73 0.639562
Target:  5'- gGGCGGACGAACGagccGGcCGCcCGCGCg -3'
miRNA:   3'- -CUGUCUGCUUGUac--CCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130536 0.73 0.670339
Target:  5'- aGGCcGACGAccccggGCcgGGGGCGCGCgaggGCGCc -3'
miRNA:   3'- -CUGuCUGCU------UGuaCCCUGCGUG----CGCG- -5'
21519 3' -54.3 NC_004812.1 + 130398 0.66 0.959632
Target:  5'- cGCGccCGGcCAcGGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUcuGCUuGUaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130136 0.66 0.955898
Target:  5'- -uCGGGCGcccACAcGGG-CGCGgGCGCg -3'
miRNA:   3'- cuGUCUGCu--UGUaCCCuGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130091 0.69 0.840427
Target:  5'- aGCAGGCGcGugAUGaGGGCGUAcugcCGCGCc -3'
miRNA:   3'- cUGUCUGC-UugUAC-CCUGCGU----GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 129777 0.69 0.864092
Target:  5'- cGGCGGcguucucgcGCGccAGCA-GGGGCGCguACGCGCg -3'
miRNA:   3'- -CUGUC---------UGC--UUGUaCCCUGCG--UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 129084 0.76 0.498422
Target:  5'- gGGCAGGCGGcgGCGgcgGcGGGCGgGCGCGCc -3'
miRNA:   3'- -CUGUCUGCU--UGUa--C-CCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128977 0.69 0.863333
Target:  5'- cGGCGGGCGGucgcgccgucagcGCGgcGGGcCGCGgGCGCg -3'
miRNA:   3'- -CUGUCUGCU-------------UGUa-CCCuGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128784 0.69 0.856406
Target:  5'- cGCGcGGCGAGCGaGGccaGCGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUaCCcugCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128603 0.72 0.740629
Target:  5'- aGGCGGGCgGGGCggGGGAgGCGC-CGCc -3'
miRNA:   3'- -CUGUCUG-CUUGuaCCCUgCGUGcGCG- -5'
21519 3' -54.3 NC_004812.1 + 128560 0.66 0.955898
Target:  5'- aGCGcGGCGAGCAggaaGGaGAgGCcgccGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGUa---CC-CUgCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128307 0.71 0.778897
Target:  5'- gGGCAGGuaGACGUGGcGGCGCGCGacgGCg -3'
miRNA:   3'- -CUGUCUgcUUGUACC-CUGCGUGCg--CG- -5'
21519 3' -54.3 NC_004812.1 + 128076 0.71 0.750363
Target:  5'- cGGCAGgggcACGGGCGUGucGGGCccgaggcgcguGCGCGCGCg -3'
miRNA:   3'- -CUGUC----UGCUUGUAC--CCUG-----------CGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.