miRNA display CGI


Results 81 - 100 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 128009 0.66 0.955898
Target:  5'- cGCGGGCGGGCGagucGGcGGCGCGgccgucgaGCGCg -3'
miRNA:   3'- cUGUCUGCUUGUa---CC-CUGCGUg-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 127854 0.72 0.690714
Target:  5'- cGCGGGCGGcaggGCGUcGGGCccgGCGCGCGCg -3'
miRNA:   3'- cUGUCUGCU----UGUAcCCUG---CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 127818 0.75 0.557793
Target:  5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3'
miRNA:   3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 127542 0.67 0.933739
Target:  5'- cGGCGGGCcucggucGGCGgcggGGGGCGCgggggaggggGCGCGCc -3'
miRNA:   3'- -CUGUCUGc------UUGUa---CCCUGCG----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 127118 0.68 0.911704
Target:  5'- -cCGGGCGccccgcGCGaGGGAcCGUGCGCGCg -3'
miRNA:   3'- cuGUCUGCu-----UGUaCCCU-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 125599 0.67 0.928592
Target:  5'- -cCGGGCGGGCucccGGcccCGCGCGCGCc -3'
miRNA:   3'- cuGUCUGCUUGua--CCcu-GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 125424 0.7 0.797272
Target:  5'- cGCGGcCGGACGgcgGcGGA-GCGCGCGCg -3'
miRNA:   3'- cUGUCuGCUUGUa--C-CCUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 125368 0.69 0.871566
Target:  5'- aGGguGGCGAGCGcGuGGACGCaccucccgACGUGCu -3'
miRNA:   3'- -CUguCUGCUUGUaC-CCUGCG--------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 125262 0.68 0.89925
Target:  5'- cGGCGGccCGGGCucgcgGcGGGCGCGCGCGa -3'
miRNA:   3'- -CUGUCu-GCUUGua---C-CCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 125235 0.66 0.955898
Target:  5'- aGCAGGC--GCGUGcGcACGCAgGCGCg -3'
miRNA:   3'- cUGUCUGcuUGUAC-CcUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 125177 0.68 0.89925
Target:  5'- aGGCGGGaGGGCccGGG-CGCGCGgGCc -3'
miRNA:   3'- -CUGUCUgCUUGuaCCCuGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 125016 0.73 0.659075
Target:  5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3'
miRNA:   3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 124850 0.68 0.89925
Target:  5'- -uCGGugG--CGUGGGGCGgGCGcCGCg -3'
miRNA:   3'- cuGUCugCuuGUACCCUGCgUGC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 124311 0.71 0.759991
Target:  5'- uGGCGG-CGAGag-GGGGCGCG-GCGCg -3'
miRNA:   3'- -CUGUCuGCUUguaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 124240 0.79 0.364726
Target:  5'- cGGCGGGCcuGGCggGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUGc-UUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 124181 0.66 0.963143
Target:  5'- cGugGGGCG-GC-UGGG-CGCGgcCGCGCc -3'
miRNA:   3'- -CugUCUGCuUGuACCCuGCGU--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 123898 0.67 0.928592
Target:  5'- --gGGACGcGCuggGGGAggUGCugGCGCc -3'
miRNA:   3'- cugUCUGCuUGua-CCCU--GCGugCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122962 0.66 0.963143
Target:  5'- uGCAGAgCGGGCAgcUGuuGCGCAUGgGCa -3'
miRNA:   3'- cUGUCU-GCUUGU--ACccUGCGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 122744 0.74 0.619001
Target:  5'- uGCGGGCGGGCGggagaGGGcGCGCACgGUGCg -3'
miRNA:   3'- cUGUCUGCUUGUa----CCC-UGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 122440 0.73 0.649838
Target:  5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3'
miRNA:   3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.