miRNA display CGI


Results 101 - 120 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 122295 0.66 0.959632
Target:  5'- uGGCcGGCGcGCGUgacgGGGGCGaACGCGUg -3'
miRNA:   3'- -CUGuCUGCuUGUA----CCCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122256 0.68 0.901817
Target:  5'- cGCGGGCGGggggccacggggaccACggGGGGCGCgGCgGCGCc -3'
miRNA:   3'- cUGUCUGCU---------------UGuaCCCUGCG-UG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 121739 0.66 0.955898
Target:  5'- gGGCcGGCGcGCGgcggGGGGCGC-CGgGCc -3'
miRNA:   3'- -CUGuCUGCuUGUa---CCCUGCGuGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 121302 0.7 0.81242
Target:  5'- gGGCAGGCGAGugcggcgggaccacCcgGGcGACGCcucggccaggGCGCGCg -3'
miRNA:   3'- -CUGUCUGCUU--------------GuaCC-CUGCG----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 121013 0.77 0.421396
Target:  5'- cGCGcGGCGGGCcgGGGGCGCuccccucggcgccgGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGuaCCCUGCG--------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 120396 0.72 0.740629
Target:  5'- cGCGGGCGAccGCGagGGcGACGCGgcCGCGCu -3'
miRNA:   3'- cUGUCUGCU--UGUa-CC-CUGCGU--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 120272 0.69 0.871566
Target:  5'- gGACGG-CGGGCAUGgaccacggccaGGACGC-CGUGUg -3'
miRNA:   3'- -CUGUCuGCUUGUAC-----------CCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 119520 0.67 0.916998
Target:  5'- cGACGG-CGAACAUgcgccucuuugacGGGACGCuccACG-GCg -3'
miRNA:   3'- -CUGUCuGCUUGUA-------------CCCUGCG---UGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 118908 0.67 0.915839
Target:  5'- cGCAGGCcGAGCucaaccaccugaugcGGGACGCG-GCGCu -3'
miRNA:   3'- cUGUCUG-CUUGua-------------CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 118828 0.67 0.917574
Target:  5'- gGACcucguGGCccACGUGGaGGCGCuCGCGCa -3'
miRNA:   3'- -CUGu----CUGcuUGUACC-CUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 116493 0.69 0.848515
Target:  5'- -cCGGAgGGGCcgGGGGuCGCggacggACGCGCg -3'
miRNA:   3'- cuGUCUgCUUGuaCCCU-GCG------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 116205 0.67 0.917574
Target:  5'- -cCGGAgGAAaaugGGGAgGgGCGCGCa -3'
miRNA:   3'- cuGUCUgCUUgua-CCCUgCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 115377 0.73 0.649838
Target:  5'- cGACAGACGAAgGcGGcGAcCGCAgCGCGUa -3'
miRNA:   3'- -CUGUCUGCUUgUaCC-CU-GCGU-GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 115351 0.68 0.911704
Target:  5'- cGGgAGcGCGGGCG-GGGACGCG-GCGCn -3'
miRNA:   3'- -CUgUC-UGCUUGUaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 114836 0.71 0.789074
Target:  5'- cGGCAGcucgaaGAGCucgaugaucuugucuUGGGcGCGCACGCGCa -3'
miRNA:   3'- -CUGUCug----CUUGu--------------ACCC-UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 114612 0.67 0.917574
Target:  5'- cGACccGGCGA---UGGGGCGCGCGgaaCGCu -3'
miRNA:   3'- -CUGu-CUGCUuguACCCUGCGUGC---GCG- -5'
21519 3' -54.3 NC_004812.1 + 114500 0.69 0.840427
Target:  5'- cGGCGGGCGAcgGCGgacuccGGGGCGCGuCGgGUc -3'
miRNA:   3'- -CUGUCUGCU--UGUa-----CCCUGCGU-GCgCG- -5'
21519 3' -54.3 NC_004812.1 + 114433 0.68 0.892671
Target:  5'- --uGGACGGcGCGUGcGugGcCACGCGCa -3'
miRNA:   3'- cugUCUGCU-UGUACcCugC-GUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 114311 0.76 0.508136
Target:  5'- uGGCGGcgcccaggaACGGACGcGGGGCGCcCGCGCu -3'
miRNA:   3'- -CUGUC---------UGCUUGUaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 113716 0.69 0.840427
Target:  5'- cACAGACuGucCGUGG--CGCGCGCGCa -3'
miRNA:   3'- cUGUCUG-CuuGUACCcuGCGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.