Results 61 - 80 of 427 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21519 | 3' | -54.3 | NC_004812.1 | + | 68178 | 0.75 | 0.551751 |
Target: 5'- cGGCGGccGCGGGCG-GGGGCGCgccggacgcccggccGCGCGCg -3' miRNA: 3'- -CUGUC--UGCUUGUaCCCUGCG---------------UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 127818 | 0.75 | 0.557793 |
Target: 5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3' miRNA: 3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 122440 | 0.73 | 0.649838 |
Target: 5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3' miRNA: 3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 115377 | 0.73 | 0.649838 |
Target: 5'- cGACAGACGAAgGcGGcGAcCGCAgCGCGUa -3' miRNA: 3'- -CUGUCUGCUUgUaCC-CU-GCGU-GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 125016 | 0.73 | 0.659075 |
Target: 5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3' miRNA: 3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 71387 | 0.73 | 0.6601 |
Target: 5'- gGACGGGCGAgGCggGGGuCGCAgCGgGCg -3' miRNA: 3'- -CUGUCUGCU-UGuaCCCuGCGU-GCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 130536 | 0.73 | 0.670339 |
Target: 5'- aGGCcGACGAccccggGCcgGGGGCGCGCgaggGCGCc -3' miRNA: 3'- -CUGuCUGCU------UGuaCCCUGCGUG----CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 85136 | 0.73 | 0.670339 |
Target: 5'- gGGCGcGCGGGCG-GGGGCGCgccuggACGCGCu -3' miRNA: 3'- -CUGUcUGCUUGUaCCCUGCG------UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 148901 | 0.73 | 0.670339 |
Target: 5'- cGGCGGGCGAGCGUccGGcGACGgGCGUccgGCg -3' miRNA: 3'- -CUGUCUGCUUGUA--CC-CUGCgUGCG---CG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 154803 | 0.73 | 0.680546 |
Target: 5'- aGGCgAGGCGcGCAgccGGGGCccgauGCACGCGCu -3' miRNA: 3'- -CUG-UCUGCuUGUa--CCCUG-----CGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 46134 | 0.73 | 0.649838 |
Target: 5'- -cCAGcACGAggagguGCAUGGGcCGCAgGCGCu -3' miRNA: 3'- cuGUC-UGCU------UGUACCCuGCGUgCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 28667 | 0.73 | 0.639562 |
Target: 5'- gGACuGGCG-GCcgGGGACGCGCuucGCGUg -3' miRNA: 3'- -CUGuCUGCuUGuaCCCUGCGUG---CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 5858 | 0.74 | 0.587232 |
Target: 5'- aGGCGGggggaacaugggcGCGGGCcggGGGGCGCGgGCGCg -3' miRNA: 3'- -CUGUC-------------UGCUUGua-CCCUGCGUgCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 110730 | 0.74 | 0.607706 |
Target: 5'- cGGCAGGCGGgagacccucGCGgaggucuUGGGGCGUuacgACGCGCg -3' miRNA: 3'- -CUGUCUGCU---------UGU-------ACCCUGCG----UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 16114 | 0.74 | 0.608732 |
Target: 5'- cGCgAGACGAACAcggaccUGGcGACGCAgcUGCGCg -3' miRNA: 3'- cUG-UCUGCUUGU------ACC-CUGCGU--GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 6786 | 0.74 | 0.608732 |
Target: 5'- cGCGGGCGAGCcgugccucggGGGGCGCGcCGgGCg -3' miRNA: 3'- cUGUCUGCUUGua--------CCCUGCGU-GCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 122744 | 0.74 | 0.619001 |
Target: 5'- uGCGGGCGGGCGggagaGGGcGCGCACgGUGCg -3' miRNA: 3'- cUGUCUGCUUGUa----CCC-UGCGUG-CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 20280 | 0.74 | 0.623112 |
Target: 5'- gGACgAGGuCGGGgGUGGGcggcgcgccggcgcaGCGCGCGCGCa -3' miRNA: 3'- -CUG-UCU-GCUUgUACCC---------------UGCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 30466 | 0.74 | 0.629281 |
Target: 5'- uGACGcuGCGGACGUGGGuCGU-CGCGCa -3' miRNA: 3'- -CUGUc-UGCUUGUACCCuGCGuGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 6335 | 0.73 | 0.639562 |
Target: 5'- gGGCAGGagGGGCAgcagGGGGCGgCAgGCGCg -3' miRNA: 3'- -CUGUCUg-CUUGUa---CCCUGC-GUgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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