Results 81 - 100 of 427 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21519 | 3' | -54.3 | NC_004812.1 | + | 13961 | 0.72 | 0.709889 |
Target: 5'- cGCAGACcAACA-GGGGCGCAgcccggcCGCGUa -3' miRNA: 3'- cUGUCUGcUUGUaCCCUGCGU-------GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 6006 | 0.72 | 0.720884 |
Target: 5'- cGGgGGGCGAGgGgaaggGGGACGCgggcagcgacuGCGCGCc -3' miRNA: 3'- -CUgUCUGCUUgUa----CCCUGCG-----------UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 70037 | 0.72 | 0.727834 |
Target: 5'- gGACAGGCGGGggcgcucgccgaccUGUGcaGGGCGCACGCGa -3' miRNA: 3'- -CUGUCUGCUU--------------GUAC--CCUGCGUGCGCg -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 91285 | 0.72 | 0.7308 |
Target: 5'- cGGCAGugGAuCGUGGGGauguaGCAgGgGCu -3' miRNA: 3'- -CUGUCugCUuGUACCCUg----CGUgCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 94329 | 0.72 | 0.7308 |
Target: 5'- cGGCGG-UGAccGCGUGGGucuccGCGCGCgGCGCg -3' miRNA: 3'- -CUGUCuGCU--UGUACCC-----UGCGUG-CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 17771 | 0.72 | 0.73769 |
Target: 5'- --uGGGCGGGCGUGGGggcgagaacgggguGgGUGCGCGCa -3' miRNA: 3'- cugUCUGCUUGUACCC--------------UgCGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 91079 | 0.72 | 0.740629 |
Target: 5'- aGACcggGGGCGAGgG-GGGGCGCcagggGCGCGCc -3' miRNA: 3'- -CUG---UCUGCUUgUaCCCUGCG-----UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 154803 | 0.73 | 0.680546 |
Target: 5'- aGGCgAGGCGcGCAgccGGGGCccgauGCACGCGCu -3' miRNA: 3'- -CUG-UCUGCuUGUa--CCCUG-----CGUGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 148901 | 0.73 | 0.670339 |
Target: 5'- cGGCGGGCGAGCGUccGGcGACGgGCGUccgGCg -3' miRNA: 3'- -CUGUCUGCUUGUA--CC-CUGCgUGCG---CG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 85136 | 0.73 | 0.670339 |
Target: 5'- gGGCGcGCGGGCG-GGGGCGCgccuggACGCGCu -3' miRNA: 3'- -CUGUcUGCUUGUaCCCUGCG------UGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 30466 | 0.74 | 0.629281 |
Target: 5'- uGACGcuGCGGACGUGGGuCGU-CGCGCa -3' miRNA: 3'- -CUGUc-UGCUUGUACCCuGCGuGCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 6335 | 0.73 | 0.639562 |
Target: 5'- gGGCAGGagGGGCAgcagGGGGCGgCAgGCGCg -3' miRNA: 3'- -CUGUCUg-CUUGUa---CCCUGC-GUgCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 28667 | 0.73 | 0.639562 |
Target: 5'- gGACuGGCG-GCcgGGGACGCGCuucGCGUg -3' miRNA: 3'- -CUGuCUGCuUGuaCCCUGCGUG---CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 46134 | 0.73 | 0.649838 |
Target: 5'- -cCAGcACGAggagguGCAUGGGcCGCAgGCGCu -3' miRNA: 3'- cuGUC-UGCU------UGUACCCuGCGUgCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 122440 | 0.73 | 0.649838 |
Target: 5'- gGGCGGcgucuccuCGGGCGgcgGGGGCGCGgGCGCc -3' miRNA: 3'- -CUGUCu-------GCUUGUa--CCCUGCGUgCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 115377 | 0.73 | 0.649838 |
Target: 5'- cGACAGACGAAgGcGGcGAcCGCAgCGCGUa -3' miRNA: 3'- -CUGUCUGCUUgUaCC-CU-GCGU-GCGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 125016 | 0.73 | 0.659075 |
Target: 5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3' miRNA: 3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 71387 | 0.73 | 0.6601 |
Target: 5'- gGACGGGCGAgGCggGGGuCGCAgCGgGCg -3' miRNA: 3'- -CUGUCUGCU-UGuaCCCuGCGU-GCgCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 130536 | 0.73 | 0.670339 |
Target: 5'- aGGCcGACGAccccggGCcgGGGGCGCGCgaggGCGCc -3' miRNA: 3'- -CUGuCUGCU------UGuaCCCUGCGUG----CGCG- -5' |
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21519 | 3' | -54.3 | NC_004812.1 | + | 108751 | 0.72 | 0.740629 |
Target: 5'- uGCAGGCGcuGCGgcuggGGGGCGCGgGgGCg -3' miRNA: 3'- cUGUCUGCu-UGUa----CCCUGCGUgCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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