miRNA display CGI


Results 41 - 60 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 5027 0.73 0.670339
Target:  5'- aGGCcGACGAccccggGCcgGGGGCGCGCgaggGCGCc -3'
miRNA:   3'- -CUGuCUGCU------UGuaCCCUGCGUG----CGCG- -5'
21519 3' -54.3 NC_004812.1 + 114311 0.76 0.508136
Target:  5'- uGGCGGcgcccaggaACGGACGcGGGGCGCcCGCGCu -3'
miRNA:   3'- -CUGUC---------UGCUUGUaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 35226 0.82 0.227381
Target:  5'- aGACGGGCGAcaucgggGCcuacguggugcucGUGGGGCGCGCGUGCa -3'
miRNA:   3'- -CUGUCUGCU-------UG-------------UACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155917 0.73 0.659075
Target:  5'- cGACGGAgcucCGGACccgGGGACGCGCuccccucGCGCc -3'
miRNA:   3'- -CUGUCU----GCUUGua-CCCUGCGUG-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 65436 0.83 0.196971
Target:  5'- cGCAGGCGAGCGUGGacGACGUGCuGCGCg -3'
miRNA:   3'- cUGUCUGCUUGUACC--CUGCGUG-CGCG- -5'
21519 3' -54.3 NC_004812.1 + 155212 0.71 0.759991
Target:  5'- uGGCGG-CGAGag-GGGGCGCG-GCGCg -3'
miRNA:   3'- -CUGUCuGCUUguaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30992 0.81 0.277052
Target:  5'- cGAgGGACGGGCc-GGGGCGCGCGCGg -3'
miRNA:   3'- -CUgUCUGCUUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 131398 0.71 0.749394
Target:  5'- cGugAG-CGAGCAcgcguccUGGGcggACGUGCGCGCg -3'
miRNA:   3'- -CugUCuGCUUGU-------ACCC---UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 18706 0.72 0.740629
Target:  5'- cGGCAGcCGcaguagcuccgcGGCGcUGGGGCGC-CGCGCg -3'
miRNA:   3'- -CUGUCuGC------------UUGU-ACCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 136457 0.72 0.700832
Target:  5'- cGCAGGCGAauccGCGcgGGGGCGCcAUGgGCg -3'
miRNA:   3'- cUGUCUGCU----UGUa-CCCUGCG-UGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 18089 0.72 0.699823
Target:  5'- uGGgGGGCGAGCcgucgugguacguGUGGGAguagcggcCGCACGUGCu -3'
miRNA:   3'- -CUgUCUGCUUG-------------UACCCU--------GCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 143209 0.73 0.680546
Target:  5'- -cCAGGaccaGGACGccGGGCGCGCGCGCc -3'
miRNA:   3'- cuGUCUg---CUUGUacCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 36908 0.73 0.670339
Target:  5'- cGGgGGGCGAGgGgaagGGGACGCgggcagcgacuGCGCGCc -3'
miRNA:   3'- -CUgUCUGCUUgUa---CCCUGCG-----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130955 0.73 0.639562
Target:  5'- gGGCGGACGAACGagccGGcCGCcCGCGCg -3'
miRNA:   3'- -CUGUCUGCUUGUac--CCuGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 37687 0.74 0.608732
Target:  5'- cGCGGGCGAGCcgugccucggGGGGCGCGcCGgGCg -3'
miRNA:   3'- cUGUCUGCUUGua--------CCCUGCGU-GCgCG- -5'
21519 3' -54.3 NC_004812.1 + 81094 0.74 0.578058
Target:  5'- uGCGGGCGGACGUGcaccGGGCGCugggggGCGUGCc -3'
miRNA:   3'- cUGUCUGCUUGUAC----CCUGCG------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30049 0.75 0.537734
Target:  5'- gGGCGGGgGAGgGgggaGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUgCUUgUa---CCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 135590 0.76 0.488791
Target:  5'- cGCGGccucaACGGcCcgGUGGGGCGCACGCGCu -3'
miRNA:   3'- cUGUC-----UGCUuG--UACCCUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 151914 0.77 0.421396
Target:  5'- cGCGcGGCGGGCcgGGGGCGCuccccucggcgccgGCGCGCg -3'
miRNA:   3'- cUGU-CUGCUUGuaCCCUGCG--------------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 30628 0.79 0.364726
Target:  5'- uGACGGgccgcGCGGACGcGGGGCGCgggACGCGCg -3'
miRNA:   3'- -CUGUC-----UGCUUGUaCCCUGCG---UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.