miRNA display CGI


Results 61 - 80 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 36908 0.73 0.670339
Target:  5'- cGGgGGGCGAGgGgaagGGGACGCgggcagcgacuGCGCGCc -3'
miRNA:   3'- -CUgUCUGCUUgUa---CCCUGCG-----------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 107879 0.72 0.690714
Target:  5'- gGGgGGGCGGuCGUccuccGGGcCGCACGCGCg -3'
miRNA:   3'- -CUgUCUGCUuGUA-----CCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 101025 0.81 0.290411
Target:  5'- cGCuGGCGAGCcUGGGGCGCuGCGUGCg -3'
miRNA:   3'- cUGuCUGCUUGuACCCUGCG-UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 124240 0.79 0.364726
Target:  5'- cGGCGGGCcuGGCggGGGGCGCGCGCGg -3'
miRNA:   3'- -CUGUCUGc-UUGuaCCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 15919 0.77 0.460445
Target:  5'- cGGCGGGCGGGgGUGGGGuCGCggggucACGCGUa -3'
miRNA:   3'- -CUGUCUGCUUgUACCCU-GCG------UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 35534 0.76 0.488791
Target:  5'- gGGCGGGgGGGC--GGGACGCcCGCGCg -3'
miRNA:   3'- -CUGUCUgCUUGuaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2310 0.75 0.557793
Target:  5'- cGGCu--CGAGCA-GGG-CGCGCGCGCa -3'
miRNA:   3'- -CUGucuGCUUGUaCCCuGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 36759 0.74 0.587232
Target:  5'- aGGCGGggggaacaugggcGCGGGCcggGGGGCGCGgGCGCg -3'
miRNA:   3'- -CUGUC-------------UGCUUGua-CCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 100349 0.74 0.608732
Target:  5'- cGCGGGCGAggcGCA-GGGGCGCGCcccCGCg -3'
miRNA:   3'- cUGUCUGCU---UGUaCCCUGCGUGc--GCG- -5'
21519 3' -54.3 NC_004812.1 + 139887 0.73 0.648811
Target:  5'- cGACGGGCGAGC--GGGAccggccccgcgguCGCuCGCGCa -3'
miRNA:   3'- -CUGUCUGCUUGuaCCCU-------------GCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 111423 0.69 0.840427
Target:  5'- cGCuccCGGGCcUGGGugACGCACGCGCc -3'
miRNA:   3'- cUGucuGCUUGuACCC--UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 82344 0.7 0.832147
Target:  5'- cGCGGACGGugcgcgGCcgGGGcgaggcguaccuGCGgGCGCGCg -3'
miRNA:   3'- cUGUCUGCU------UGuaCCC------------UGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 35924 0.72 0.700832
Target:  5'- cGGCAGugGGGCGgcaggcGGGGCaGCGC-CGCg -3'
miRNA:   3'- -CUGUCugCUUGUa-----CCCUG-CGUGcGCG- -5'
21519 3' -54.3 NC_004812.1 + 80525 0.72 0.7308
Target:  5'- uGGCGGagaagcucGCGGACc-GGGACGCcCGCGCc -3'
miRNA:   3'- -CUGUC--------UGCUUGuaCCCUGCGuGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 131398 0.71 0.749394
Target:  5'- cGugAG-CGAGCAcgcguccUGGGcggACGUGCGCGCg -3'
miRNA:   3'- -CugUCuGCUUGU-------ACCC---UGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 155212 0.71 0.759991
Target:  5'- uGGCGG-CGAGag-GGGGCGCG-GCGCg -3'
miRNA:   3'- -CUGUCuGCUUguaCCCUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 2799 0.71 0.778897
Target:  5'- gGGCAGGuaGACGUGGcGGCGCGCGacgGCg -3'
miRNA:   3'- -CUGUCUgcUUGUACC-CUGCGUGCg--CG- -5'
21519 3' -54.3 NC_004812.1 + 86476 0.71 0.788155
Target:  5'- cGGCGGAggcCGAACGcGGGcCGCagccACGCGCc -3'
miRNA:   3'- -CUGUCU---GCUUGUaCCCuGCG----UGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 94118 0.7 0.803564
Target:  5'- cGGCGGGC--GCGUGGuccgcgccggcccaGAgGCGCGCGCg -3'
miRNA:   3'- -CUGUCUGcuUGUACC--------------CUgCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 56186 0.7 0.815045
Target:  5'- --uGGGCGGACGUGcGGGCGgccuCGCgGCGCa -3'
miRNA:   3'- cugUCUGCUUGUAC-CCUGC----GUG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.