miRNA display CGI


Results 21 - 40 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 3' -54.3 NC_004812.1 + 138234 0.66 0.959632
Target:  5'- --uGGACG-AUGUGGGGCcCGCGgGCc -3'
miRNA:   3'- cugUCUGCuUGUACCCUGcGUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 20583 0.66 0.959632
Target:  5'- -cCAGAcCGGACcgGccgguggcgaGGACGCGCGCcuGCg -3'
miRNA:   3'- cuGUCU-GCUUGuaC----------CCUGCGUGCG--CG- -5'
21519 3' -54.3 NC_004812.1 + 43857 0.66 0.959632
Target:  5'- cGACGucCGGGCGcGGcGGCGCcgcCGCGCg -3'
miRNA:   3'- -CUGUcuGCUUGUaCC-CUGCGu--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 122295 0.66 0.959632
Target:  5'- uGGCcGGCGcGCGUgacgGGGGCGaACGCGUg -3'
miRNA:   3'- -CUGuCUGCuUGUA----CCCUGCgUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 79591 0.66 0.959632
Target:  5'- cAUAGAgGccauGCuggaGGaGGCGCGCGCGCg -3'
miRNA:   3'- cUGUCUgCu---UGua--CC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 130398 0.66 0.959632
Target:  5'- cGCGccCGGcCAcGGcGGCGCGCGCGCg -3'
miRNA:   3'- cUGUcuGCUuGUaCC-CUGCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 101022 0.66 0.959632
Target:  5'- aGGCAG-CGGAUcgccucGGGGUGCACGCGg -3'
miRNA:   3'- -CUGUCuGCUUGua----CCCUGCGUGCGCg -5'
21519 3' -54.3 NC_004812.1 + 105654 0.66 0.959632
Target:  5'- aGGCuGGCGucCAgagGGGACGgGCGgcCGCg -3'
miRNA:   3'- -CUGuCUGCuuGUa--CCCUGCgUGC--GCG- -5'
21519 3' -54.3 NC_004812.1 + 69601 0.66 0.959632
Target:  5'- cGGCGGugGcccGCggGuGGugGUGCGUGCc -3'
miRNA:   3'- -CUGUCugCu--UGuaC-CCugCGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 93565 0.66 0.958903
Target:  5'- -cCAGACGcccccgccuccCcgGGGGCcaaGCGCGCGCu -3'
miRNA:   3'- cuGUCUGCuu---------GuaCCCUG---CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 128009 0.66 0.955898
Target:  5'- cGCGGGCGGGCGagucGGcGGCGCGgccgucgaGCGCg -3'
miRNA:   3'- cUGUCUGCUUGUa---CC-CUGCGUg-------CGCG- -5'
21519 3' -54.3 NC_004812.1 + 141213 0.66 0.955898
Target:  5'- ---cGGCGGGCG-GGGGCgaGUACGUGCc -3'
miRNA:   3'- cuguCUGCUUGUaCCCUG--CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 125235 0.66 0.955898
Target:  5'- aGCAGGC--GCGUGcGcACGCAgGCGCg -3'
miRNA:   3'- cUGUCUGcuUGUAC-CcUGCGUgCGCG- -5'
21519 3' -54.3 NC_004812.1 + 50744 0.66 0.955898
Target:  5'- uGCGG-CGAACGcGGGGCcgaGUACGUGUc -3'
miRNA:   3'- cUGUCuGCUUGUaCCCUG---CGUGCGCG- -5'
21519 3' -54.3 NC_004812.1 + 10778 0.66 0.955898
Target:  5'- aGACAGucccCGGGCGUGGGcCGCcgacccCGcCGCc -3'
miRNA:   3'- -CUGUCu---GCUUGUACCCuGCGu-----GC-GCG- -5'
21519 3' -54.3 NC_004812.1 + 37343 0.66 0.955898
Target:  5'- cGGCGGGgGGACcgccGGGACGacCGCGgGCc -3'
miRNA:   3'- -CUGUCUgCUUGua--CCCUGC--GUGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 77235 0.66 0.955898
Target:  5'- cGACGcGgGggUGUGGGGCGCugcccuCGCGg -3'
miRNA:   3'- -CUGUcUgCuuGUACCCUGCGu-----GCGCg -5'
21519 3' -54.3 NC_004812.1 + 84177 0.66 0.955898
Target:  5'- -cCGGACGAGCccGUGGG-CGaaacCGUGCa -3'
miRNA:   3'- cuGUCUGCUUG--UACCCuGCgu--GCGCG- -5'
21519 3' -54.3 NC_004812.1 + 133531 0.66 0.955898
Target:  5'- aGCAG-CGucGCGUGGGugGCcaccauGCGgGCc -3'
miRNA:   3'- cUGUCuGCu-UGUACCCugCG------UGCgCG- -5'
21519 3' -54.3 NC_004812.1 + 4628 0.66 0.955898
Target:  5'- -uCGGGCGcccACAcGGG-CGCGgGCGCg -3'
miRNA:   3'- cuGUCUGCu--UGUaCCCuGCGUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.