miRNA display CGI


Results 41 - 60 of 686 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 58358 0.66 0.496789
Target:  5'- -cGCG-GGU-CCCGGCCuccagggCCGCgCCGCCc -3'
miRNA:   3'- ccCGCaCCAcGGGCUGG-------GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 123828 0.66 0.506579
Target:  5'- cGGGCG-GG-GCCCGGg--CGCCCggGCCa -3'
miRNA:   3'- -CCCGCaCCaCGGGCUgggGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 52913 0.66 0.51016
Target:  5'- aGGGCGUcGcGCUCGAggcggaucucguuguCCUCGCCCaGCUg -3'
miRNA:   3'- -CCCGCAcCaCGGGCU---------------GGGGCGGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 140569 0.66 0.488843
Target:  5'- cGGUGaucgGGgGCCUcugcgcgcuGACCCUGgCCGCCa -3'
miRNA:   3'- cCCGCa---CCaCGGG---------CUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 151563 0.66 0.497675
Target:  5'- gGGGCGcGGcGCCCucgcgcGCCCCcgGCCCGg- -3'
miRNA:   3'- -CCCGCaCCaCGGGc-----UGGGG--CGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 2906 0.66 0.497675
Target:  5'- uGGGUGgaccgcccgGGggaGCCCG-CCCCGUCCucgGUCa -3'
miRNA:   3'- -CCCGCa--------CCa--CGGGCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 152765 0.66 0.519157
Target:  5'- -cGCGcUGGUGCUCaugcgccugcgcgggGACCuCCGCgUCGCCg -3'
miRNA:   3'- ccCGC-ACCACGGG---------------CUGG-GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 41200 0.66 0.523679
Target:  5'- cGGGCGUgaaguugaagGGgaagacgGCCCccgguuGCCCCGaacgaacCCCGCCc -3'
miRNA:   3'- -CCCGCA----------CCa------CGGGc-----UGGGGC-------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 100457 0.66 0.497675
Target:  5'- aGGGCGUGGUGCgggcguagagGGgCgCGgCCGCCc -3'
miRNA:   3'- -CCCGCACCACGgg--------CUgGgGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 71945 0.66 0.506579
Target:  5'- cGGCGcgGGgcgGCCCuGCCgcgaCGCgCGCCg -3'
miRNA:   3'- cCCGCa-CCa--CGGGcUGGg---GCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 86022 0.66 0.488843
Target:  5'- gGGGCGUGGgcggucaggaacUGCUauuaGagugacucaGCCCCagGCCCGCUu -3'
miRNA:   3'- -CCCGCACC------------ACGGg---C---------UGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 118419 0.66 0.487963
Target:  5'- cGGGCGacaGGcgGCCucacacgCGGCCgCCGCCC-CCu -3'
miRNA:   3'- -CCCGCa--CCa-CGG-------GCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 48165 0.66 0.51555
Target:  5'- cGGGCGgcggccgcGGcGCUggagaacgCGGCCCUGCaggCCGCCg -3'
miRNA:   3'- -CCCGCa-------CCaCGG--------GCUGGGGCG---GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 67629 0.66 0.524585
Target:  5'- aGGGcCGUGGccagggacgGCUgGGgcCCCUGgCCGCCg -3'
miRNA:   3'- -CCC-GCACCa--------CGGgCU--GGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 137050 0.66 0.523679
Target:  5'- cGGgGUGGUGgCCGGCCUgGgcuucgcgauccaCCgCGCCc -3'
miRNA:   3'- cCCgCACCACgGGCUGGGgC-------------GG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 100676 0.66 0.488843
Target:  5'- cGGCGUcGG-GCCCGGCgCUCGCgCGg- -3'
miRNA:   3'- cCCGCA-CCaCGGGCUG-GGGCGgGCgg -5'
21519 5' -66.1 NC_004812.1 + 126296 0.66 0.528216
Target:  5'- gGGGCcguuccUGGUGCCCgcggagguccccaggGACCCCucggcgugcugcGCCCuggGCCc -3'
miRNA:   3'- -CCCGc-----ACCACGGG---------------CUGGGG------------CGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 119210 0.66 0.488843
Target:  5'- ---gGUGGUGUCCGcgGCCCC-CCCuuGCCu -3'
miRNA:   3'- cccgCACCACGGGC--UGGGGcGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 32358 0.66 0.51465
Target:  5'- gGGGCGcc--GCCgCGcgcGCCCCccgccagGCCCGCCg -3'
miRNA:   3'- -CCCGCaccaCGG-GC---UGGGG-------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 42762 0.66 0.503901
Target:  5'- cGGGCGUgaccucuuuGGUG-CUGGCCgugggugacguagaCCGCCUGUCu -3'
miRNA:   3'- -CCCGCA---------CCACgGGCUGG--------------GGCGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.