miRNA display CGI


Results 61 - 80 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 125065 0.66 0.480083
Target:  5'- cGGCGuUGGUGggcgcaCUCGAUCCCGgCUGUCc -3'
miRNA:   3'- cCCGC-ACCAC------GGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 3327 0.66 0.480083
Target:  5'- gGGGag-GG-GCCCGaggggccgccgcGCCCCGCgccccggcccCCGCCg -3'
miRNA:   3'- -CCCgcaCCaCGGGC------------UGGGGCG----------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 45946 0.66 0.506579
Target:  5'- aGGUuauugGGUcUCCGACCCCucCCCGCCc -3'
miRNA:   3'- cCCGca---CCAcGGGCUGGGGc-GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 142841 0.66 0.497675
Target:  5'- uGGCGUucacccugugccGGUcgacccgaaggGCCCagaGCCCCGCCuaCGCCg -3'
miRNA:   3'- cCCGCA------------CCA-----------CGGGc--UGGGGCGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 8431 0.66 0.524585
Target:  5'- -----cGGagGCcgCCGcCCCCGCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CG--GGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 118105 0.66 0.524585
Target:  5'- cGGCGcGaccUCCGACCCCGggccuccgucCCCGCCa -3'
miRNA:   3'- cCCGCaCcacGGGCUGGGGC----------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 56527 0.66 0.497675
Target:  5'- cGGGgG-GGacgacgaGcCCCGACCCCaCCgCGCCa -3'
miRNA:   3'- -CCCgCaCCa------C-GGGCUGGGGcGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 126539 0.66 0.51555
Target:  5'- -cGCGaGG-GCCCGgccGCCCgCGCgCGCCc -3'
miRNA:   3'- ccCGCaCCaCGGGC---UGGG-GCGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 25865 0.66 0.480083
Target:  5'- gGGGCcUGGgguugGCggcggCCGGCCCucccgcggCGCCCGCg -3'
miRNA:   3'- -CCCGcACCa----CG-----GGCUGGG--------GCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 57995 0.66 0.480083
Target:  5'- cGGCGcUGGccaCCGacGCCCCGCCCucggcgaugauGCCg -3'
miRNA:   3'- cCCGC-ACCacgGGC--UGGGGCGGG-----------CGG- -5'
21519 5' -66.1 NC_004812.1 + 97277 0.66 0.480083
Target:  5'- cGGGgugccuguCGUGG-GaCCCGACCCCcgucgaccacgaGCUCGCg -3'
miRNA:   3'- -CCC--------GCACCaC-GGGCUGGGG------------CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 138378 0.66 0.488843
Target:  5'- cGGGCG-GGgGCgCGuACgCCGCCCgggugGCCu -3'
miRNA:   3'- -CCCGCaCCaCGgGC-UGgGGCGGG-----CGG- -5'
21519 5' -66.1 NC_004812.1 + 96041 0.66 0.524585
Target:  5'- -cGCG-GGUGCgCauGCUCCGCCgGCCc -3'
miRNA:   3'- ccCGCaCCACG-GgcUGGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 83428 0.66 0.486207
Target:  5'- gGGGaCGUGGUcGCCaauACCCCaGCCuugaggucguccauCGCCu -3'
miRNA:   3'- -CCC-GCACCA-CGGgc-UGGGG-CGG--------------GCGG- -5'
21519 5' -66.1 NC_004812.1 + 15063 0.66 0.488843
Target:  5'- aGGCGgacUGGcgGCgacaCGuCgCCGCCCGCCg -3'
miRNA:   3'- cCCGC---ACCa-CGg---GCuGgGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 86022 0.66 0.488843
Target:  5'- gGGGCGUGGgcggucaggaacUGCUauuaGagugacucaGCCCCagGCCCGCUu -3'
miRNA:   3'- -CCCGCACC------------ACGGg---C---------UGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 88986 0.66 0.497675
Target:  5'- aGGCGcUGccGUGCCUGGCCgCGgaccaCCCGCUu -3'
miRNA:   3'- cCCGC-AC--CACGGGCUGGgGC-----GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 53346 0.66 0.506579
Target:  5'- aGGGCuucggGGUcgccgccgcgucGCCCGGCCgCCGCuCCuGCUc -3'
miRNA:   3'- -CCCGca---CCA------------CGGGCUGG-GGCG-GG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 34228 0.66 0.480083
Target:  5'- gGGGag-GG-GCCCGaggggccgccgcGCCCCGCgccccggcccCCGCCg -3'
miRNA:   3'- -CCCgcaCCaCGGGC------------UGGGGCG----------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 71945 0.66 0.506579
Target:  5'- cGGCGcgGGgcgGCCCuGCCgcgaCGCgCGCCg -3'
miRNA:   3'- cCCGCa-CCa--CGGGcUGGg---GCGgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.