miRNA display CGI


Results 81 - 100 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 99537 0.66 0.480083
Target:  5'- cGGCGacgcGGUGUcggagCCGACCgCgGCCCGgCa -3'
miRNA:   3'- cCCGCa---CCACG-----GGCUGG-GgCGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 77740 0.66 0.51555
Target:  5'- aGGGgGUGG-GggCGGCCuCCGCCCuCCc -3'
miRNA:   3'- -CCCgCACCaCggGCUGG-GGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 96041 0.66 0.524585
Target:  5'- -cGCG-GGUGCgCauGCUCCGCCgGCCc -3'
miRNA:   3'- ccCGCaCCACG-GgcUGGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 69533 0.66 0.524585
Target:  5'- cGGGUccGGccGCCCccccgcGCCCCuGCCCGCg -3'
miRNA:   3'- -CCCGcaCCa-CGGGc-----UGGGG-CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 124591 0.66 0.51555
Target:  5'- -uGCGaUGG-GCCCcggcgaagcGACCCgGgCCGCCg -3'
miRNA:   3'- ccCGC-ACCaCGGG---------CUGGGgCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 130723 0.66 0.488843
Target:  5'- uGGGCGcgGGcGCCgCGGagggCCGgCCGCCg -3'
miRNA:   3'- -CCCGCa-CCaCGG-GCUgg--GGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 7703 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138102 0.66 0.497675
Target:  5'- uGGCGggaugGGgucuccgGCUCGACgCCCcUCCGCCc -3'
miRNA:   3'- cCCGCa----CCa------CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 53346 0.66 0.506579
Target:  5'- aGGGCuucggGGUcgccgccgcgucGCCCGGCCgCCGCuCCuGCUc -3'
miRNA:   3'- -CCCGca---CCA------------CGGGCUGG-GGCG-GG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 58063 0.66 0.506579
Target:  5'- uGGGCcccGGcGCCCGGCgCCGaggCCGCg -3'
miRNA:   3'- -CCCGca-CCaCGGGCUGgGGCg--GGCGg -5'
21519 5' -66.1 NC_004812.1 + 55945 0.66 0.480956
Target:  5'- cGGGCccgacgccgagGCCCGGCCCggcgcggcuCGCgCCGCCg -3'
miRNA:   3'- -CCCGcacca------CGGGCUGGG---------GCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 65109 0.66 0.488843
Target:  5'- aGGaGUGGcugGCgCGGCCCCuGCCgGUCg -3'
miRNA:   3'- cCCgCACCa--CGgGCUGGGG-CGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 83377 0.66 0.488843
Target:  5'- gGGGCG-GGccGCCCG--CCCGaCCCGCn -3'
miRNA:   3'- -CCCGCaCCa-CGGGCugGGGC-GGGCGg -5'
21519 5' -66.1 NC_004812.1 + 67629 0.66 0.524585
Target:  5'- aGGGcCGUGGccagggacgGCUgGGgcCCCUGgCCGCCg -3'
miRNA:   3'- -CCC-GCACCa--------CGGgCU--GGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1920 0.66 0.480083
Target:  5'- uGGGCcgaGGcuccgGCCgGggcGCUCCGCCCGUCg -3'
miRNA:   3'- -CCCGca-CCa----CGGgC---UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 15063 0.66 0.488843
Target:  5'- aGGCGgacUGGcgGCgacaCGuCgCCGCCCGCCg -3'
miRNA:   3'- cCCGC---ACCa-CGg---GCuGgGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 91095 0.66 0.497675
Target:  5'- gGGGCGccaggGGcGCgCCGuccCCUCGCCC-CCg -3'
miRNA:   3'- -CCCGCa----CCaCG-GGCu--GGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 58358 0.66 0.496789
Target:  5'- -cGCG-GGU-CCCGGCCuccagggCCGCgCCGCCc -3'
miRNA:   3'- ccCGCaCCAcGGGCUGG-------GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 140569 0.66 0.488843
Target:  5'- cGGUGaucgGGgGCCUcugcgcgcuGACCCUGgCCGCCa -3'
miRNA:   3'- cCCGCa---CCaCGGG---------CUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 7852 0.66 0.51465
Target:  5'- gGGGCGggGGUcGgUCGuagcggcGCCCCGCgCGUCg -3'
miRNA:   3'- -CCCGCa-CCA-CgGGC-------UGGGGCGgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.