miRNA display CGI


Results 101 - 120 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 67629 0.66 0.524585
Target:  5'- aGGGcCGUGGccagggacgGCUgGGgcCCCUGgCCGCCg -3'
miRNA:   3'- -CCC-GCACCa--------CGGgCU--GGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 96041 0.66 0.524585
Target:  5'- -cGCG-GGUGCgCauGCUCCGCCgGCCc -3'
miRNA:   3'- ccCGCaCCACG-GgcUGGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 69533 0.66 0.524585
Target:  5'- cGGGUccGGccGCCCccccgcGCCCCuGCCCGCg -3'
miRNA:   3'- -CCCGcaCCa-CGGGc-----UGGGG-CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 57065 0.66 0.524585
Target:  5'- cGGGcCGcGGUcgGCuCCGACaCCGCgUCGCCg -3'
miRNA:   3'- -CCC-GCaCCA--CG-GGCUGgGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 121504 0.66 0.524585
Target:  5'- -cGCGUGGgGCCgGGCgCCGCgggggCGCCc -3'
miRNA:   3'- ccCGCACCaCGGgCUGgGGCGg----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 3961 0.66 0.51555
Target:  5'- -----cGGagGCCCGGCgCCCcCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 72977 0.66 0.51555
Target:  5'- aGGGCGgc--GUCgGcGCCCCGCUCGCg -3'
miRNA:   3'- -CCCGCaccaCGGgC-UGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 3856 0.66 0.480083
Target:  5'- -cGcCGUGGUcGCCgCGGCCgCCgcgGCCCGCa -3'
miRNA:   3'- ccC-GCACCA-CGG-GCUGG-GG---CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 138048 0.66 0.524585
Target:  5'- cGGGCGggcaccacGGcuCCCGGCaaCGCgCCGCCa -3'
miRNA:   3'- -CCCGCa-------CCacGGGCUGggGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 117186 0.66 0.480083
Target:  5'- cGGCGaGGcGCUCGACgggaCCCGCgucggcacgcaCCGCCa -3'
miRNA:   3'- cCCGCaCCaCGGGCUG----GGGCG-----------GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 55945 0.66 0.480956
Target:  5'- cGGGCccgacgccgagGCCCGGCCCggcgcggcuCGCgCCGCCg -3'
miRNA:   3'- -CCCGcacca------CGGGCUGGG---------GCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 77781 0.66 0.480083
Target:  5'- -aGCGUcGUccgaaccCCCGACCCCaGCCgGCCg -3'
miRNA:   3'- ccCGCAcCAc------GGGCUGGGG-CGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 77858 0.66 0.480083
Target:  5'- -aGCGUcGUccgaaccCCCGACCCCaGCCgGCCg -3'
miRNA:   3'- ccCGCAcCAc------GGGCUGGGG-CGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 125065 0.66 0.480083
Target:  5'- cGGCGuUGGUGggcgcaCUCGAUCCCGgCUGUCc -3'
miRNA:   3'- cCCGC-ACCAC------GGGCUGGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 57995 0.66 0.480083
Target:  5'- cGGCGcUGGccaCCGacGCCCCGCCCucggcgaugauGCCg -3'
miRNA:   3'- cCCGC-ACCacgGGC--UGGGGCGGG-----------CGG- -5'
21519 5' -66.1 NC_004812.1 + 7703 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 86022 0.66 0.488843
Target:  5'- gGGGCGUGGgcggucaggaacUGCUauuaGagugacucaGCCCCagGCCCGCUu -3'
miRNA:   3'- -CCCGCACC------------ACGGg---C---------UGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 94339 0.66 0.48533
Target:  5'- -cGCGUGGgucuccgcgcgcgGCgCGGCCCCGgCgCGCUg -3'
miRNA:   3'- ccCGCACCa------------CGgGCUGGGGCgG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 126856 0.66 0.480083
Target:  5'- cGGUuUGGcGUCCGccgcGCCCCcccucgGCCCGCCc -3'
miRNA:   3'- cCCGcACCaCGGGC----UGGGG------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1920 0.66 0.480083
Target:  5'- uGGGCcgaGGcuccgGCCgGggcGCUCCGCCCGUCg -3'
miRNA:   3'- -CCCGca-CCa----CGGgC---UGGGGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.