miRNA display CGI


Results 41 - 60 of 686 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 124860 0.76 0.124883
Target:  5'- gGGGCG-GGcGCCgCGcCCCCGCCCcgcGCCu -3'
miRNA:   3'- -CCCGCaCCaCGG-GCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 93538 0.76 0.124883
Target:  5'- gGGGCGcgGGUGCggcggcgugCCG-UCCCGCCCGCg -3'
miRNA:   3'- -CCCGCa-CCACG---------GGCuGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 87574 0.76 0.126086
Target:  5'- gGGGCG-GGUuguuuggcagauaggGCCCGGCCUCGCacuccCCGCCc -3'
miRNA:   3'- -CCCGCaCCA---------------CGGGCUGGGGCG-----GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 124184 0.76 0.12791
Target:  5'- gGGGCGgcUGG-GCgCGGCCgCGCCCGCg -3'
miRNA:   3'- -CCCGC--ACCaCGgGCUGGgGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 88423 0.76 0.12791
Target:  5'- cGGGCGUccgGCgCGcCCCCGCCCGCg -3'
miRNA:   3'- -CCCGCAccaCGgGCuGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 50911 0.75 0.130692
Target:  5'- gGGGCGUGGUggggaacGCCCGcgaaaacccggaACUCCGCggCCGCCc -3'
miRNA:   3'- -CCCGCACCA-------CGGGC------------UGGGGCG--GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 8057 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 38958 0.75 0.131005
Target:  5'- cGGCGcccGGccgGCCCgcGACCCCGCCgCGCCc -3'
miRNA:   3'- cCCGCa--CCa--CGGG--CUGGGGCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 82803 0.75 0.131005
Target:  5'- uGGgGUGGgagcgcgggGCgCCGGCgCCCGCCCGCUc -3'
miRNA:   3'- cCCgCACCa--------CG-GGCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 54537 0.75 0.133212
Target:  5'- -cGCGuUGGUGCCCGgcgcgcccggcgcgGCCCCGgCCuCGCCa -3'
miRNA:   3'- ccCGC-ACCACGGGC--------------UGGGGC-GG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 140656 0.75 0.134169
Target:  5'- gGGGCGUccGGUcGCCCGGCCgaaGCCCGgCa -3'
miRNA:   3'- -CCCGCA--CCA-CGGGCUGGgg-CGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 156091 0.75 0.137402
Target:  5'- cGGGCGcgcGG-GCCCG-CCCCGgCCGCg -3'
miRNA:   3'- -CCCGCa--CCaCGGGCuGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 125190 0.75 0.137402
Target:  5'- cGGGCGcgcGG-GCCCG-CCCCGgCCGCg -3'
miRNA:   3'- -CCCGCa--CCaCGGGCuGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 39300 0.75 0.140708
Target:  5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 8399 0.75 0.140708
Target:  5'- gGGGCGcggcgGGgGCUCGGCCCCGgCCGUa -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUGGGGCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 150695 0.75 0.140708
Target:  5'- cGGGCG-GcGUcGCggCGGCUCCGCCCGCCg -3'
miRNA:   3'- -CCCGCaC-CA-CGg-GCUGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18343 0.75 0.144086
Target:  5'- aGGGCGcGGcGCgCGACCgCGgCCGCCg -3'
miRNA:   3'- -CCCGCaCCaCGgGCUGGgGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 31750 0.75 0.147538
Target:  5'- gGGGCGgGG-GCgCGGCgCCCGCCCcacGCCa -3'
miRNA:   3'- -CCCGCaCCaCGgGCUG-GGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 126811 0.75 0.147538
Target:  5'- aGGCG-GG-GCgCCGACCCCcgggcCCCGCCg -3'
miRNA:   3'- cCCGCaCCaCG-GGCUGGGGc----GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 124483 0.75 0.147538
Target:  5'- cGGcCGUGGcGUCCGGCCuCCGCCagggCGCCa -3'
miRNA:   3'- cCC-GCACCaCGGGCUGG-GGCGG----GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.