miRNA display CGI


Results 81 - 100 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 82245 0.74 0.169874
Target:  5'- cGGGCG-GGacCCCGccGCCCgCGCCCGCg -3'
miRNA:   3'- -CCCGCaCCacGGGC--UGGG-GCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 112255 0.74 0.173879
Target:  5'- gGGGCGUGGUugguggGCggGGCCaCCaGCCCGCCc -3'
miRNA:   3'- -CCCGCACCA------CGggCUGG-GG-CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 73239 0.74 0.173879
Target:  5'- cGGGCG-GGcgGCCCGcCCCCaggcgGgCCGCCa -3'
miRNA:   3'- -CCCGCaCCa-CGGGCuGGGG-----CgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 74369 0.73 0.177967
Target:  5'- cGGGCGgcggGGU-CCCG-CCCgCGCCCGUUu -3'
miRNA:   3'- -CCCGCa---CCAcGGGCuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 41935 0.73 0.177967
Target:  5'- cGGGCGc---GCCCGGCaCCgGCCCGCUc -3'
miRNA:   3'- -CCCGCaccaCGGGCUG-GGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 79130 0.73 0.177967
Target:  5'- cGGGCccgGGUcccaGCCCcGCCuCCGCUCGCCa -3'
miRNA:   3'- -CCCGca-CCA----CGGGcUGG-GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 95792 0.73 0.182141
Target:  5'- gGGGCGgugcUGGUGaagugaCCG-CCCCGCCCGaCg -3'
miRNA:   3'- -CCCGC----ACCACg-----GGCuGGGGCGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 148872 0.73 0.182141
Target:  5'- aGGCG-GGcGCCCccGGCCUCGCCCGgCg -3'
miRNA:   3'- cCCGCaCCaCGGG--CUGGGGCGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 117971 0.73 0.182141
Target:  5'- aGGCG-GGcGCCCccGGCCUCGCCCGgCg -3'
miRNA:   3'- cCCGCaCCaCGGG--CUGGGGCGGGCgG- -5'
21519 5' -66.1 NC_004812.1 + 152106 0.73 0.182141
Target:  5'- cGGcGaCGUGGaGCUCGACCgCGCCUGCUu -3'
miRNA:   3'- -CC-C-GCACCaCGGGCUGGgGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 26598 0.73 0.182141
Target:  5'- cGGcGaCGUGGaGCUCGACCgCGCCUGCUu -3'
miRNA:   3'- -CC-C-GCACCaCGGGCUGGgGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 106852 0.73 0.182141
Target:  5'- uGGGUGUGcGUuuccgggcccccGCCgCGACCCCGacCCCGUCg -3'
miRNA:   3'- -CCCGCAC-CA------------CGG-GCUGGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18461 0.73 0.186402
Target:  5'- cGGCGgggGG-GCgCGGCCCCgcGCCCGCg -3'
miRNA:   3'- cCCGCa--CCaCGgGCUGGGG--CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 60985 0.73 0.189436
Target:  5'- uGGGCGgaggUGGaGCCCGGCCCggugccguugcugcUGCCgCGCCc -3'
miRNA:   3'- -CCCGC----ACCaCGGGCUGGG--------------GCGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 92248 0.73 0.190311
Target:  5'- uGGCGaGGUagucccgGUCCGGCUCCagGCCCGCCa -3'
miRNA:   3'- cCCGCaCCA-------CGGGCUGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18560 0.73 0.19075
Target:  5'- cGGCGcGG-GCCCG-CUCCGCcgCCGCCg -3'
miRNA:   3'- cCCGCaCCaCGGGCuGGGGCG--GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 120220 0.73 0.19075
Target:  5'- cGGC-UGG-GCCCGGCCCagccccuGCCCGUCu -3'
miRNA:   3'- cCCGcACCaCGGGCUGGGg------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 125783 0.73 0.19075
Target:  5'- cGGGCGgc--GCCUGGCgCCGCCCuGCCc -3'
miRNA:   3'- -CCCGCaccaCGGGCUGgGGCGGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 57358 0.73 0.19075
Target:  5'- cGGuGCGUGccuccgGCCCGGacggcCCCCGCCCccGCCg -3'
miRNA:   3'- -CC-CGCACca----CGGGCU-----GGGGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 94441 0.73 0.191189
Target:  5'- cGGGCGgccgcGG-GCCCGAagaacccggaggccgCCCGCgCCGCCg -3'
miRNA:   3'- -CCCGCa----CCaCGGGCUg--------------GGGCG-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.