miRNA display CGI


Results 101 - 120 of 686 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 126996 0.73 0.195186
Target:  5'- cGGGCGgcggcGGaGCgCCGGCcggCCCGCgCCGCCg -3'
miRNA:   3'- -CCCGCa----CCaCG-GGCUG---GGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 30768 0.73 0.195186
Target:  5'- gGGGcCGcGG-GCgagCCGGCCCCGCCUGCg -3'
miRNA:   3'- -CCC-GCaCCaCG---GGCUGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 149051 0.73 0.195186
Target:  5'- gGGGCG-GGaccGCCC--CCCgCGCCCGCCc -3'
miRNA:   3'- -CCCGCaCCa--CGGGcuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 15518 0.73 0.195186
Target:  5'- gGGGaGUGGcgcgUGCgUGACCCCGCCgGCg -3'
miRNA:   3'- -CCCgCACC----ACGgGCUGGGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 1488 0.73 0.195186
Target:  5'- cGGGCGgcggcGGaGCgCCGGCcggCCCGCgCCGCCg -3'
miRNA:   3'- -CCCGCa----CCaCG-GGCUG---GGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 23543 0.73 0.195186
Target:  5'- gGGGCG-GGaccGCCC--CCCgCGCCCGCCc -3'
miRNA:   3'- -CCCGCaCCa--CGGGcuGGG-GCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 79754 0.73 0.199256
Target:  5'- gGGGgGUGGacgugccUGCCCGACgCCGCgCagGCCg -3'
miRNA:   3'- -CCCgCACC-------ACGGGCUGgGGCG-Gg-CGG- -5'
21519 5' -66.1 NC_004812.1 + 29605 0.73 0.199713
Target:  5'- cGGCGcGGgccgGCCgGcgcuccGCCgCCGCCCGCCg -3'
miRNA:   3'- cCCGCaCCa---CGGgC------UGG-GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 17606 0.73 0.199713
Target:  5'- cGGGCGaGGcggGCCCGGgCgaaCCGCuCCGCCg -3'
miRNA:   3'- -CCCGCaCCa--CGGGCUgG---GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 155113 0.73 0.199713
Target:  5'- cGGCGcGGgccgGCCgGcgcuccGCCgCCGCCCGCCg -3'
miRNA:   3'- cCCGCaCCa---CGGgC------UGG-GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 129143 0.73 0.199713
Target:  5'- cGGCG-GGcGCgCGGCgCCGCCCGCg -3'
miRNA:   3'- cCCGCaCCaCGgGCUGgGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 3635 0.73 0.199713
Target:  5'- cGGCG-GGcGCgCGGCgCCGCCCGCg -3'
miRNA:   3'- cCCGCaCCaCGgGCUGgGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 4812 0.73 0.204331
Target:  5'- cGGGCGcgGGgucgGCaCgCGGCCCCGaCCCaGCCc -3'
miRNA:   3'- -CCCGCa-CCa---CG-G-GCUGGGGC-GGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 35713 0.73 0.204331
Target:  5'- cGGGCGcgGGgucgGCaCgCGGCCCCGaCCCaGCCc -3'
miRNA:   3'- -CCCGCa-CCa---CG-G-GCUGGGGC-GGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 11043 0.72 0.208566
Target:  5'- cGGGCGccgccggUGGcGCCCGACCCCGggaCCaGCg -3'
miRNA:   3'- -CCCGC-------ACCaCGGGCUGGGGCg--GG-CGg -5'
21519 5' -66.1 NC_004812.1 + 108289 0.72 0.209041
Target:  5'- cGGGCGgGGUcgggcaccacGCCCGAgCCCGCaCGCg -3'
miRNA:   3'- -CCCGCaCCA----------CGGGCUgGGGCGgGCGg -5'
21519 5' -66.1 NC_004812.1 + 3450 0.72 0.213844
Target:  5'- --cCGUGGUcCCCGuggccCCCCGCCCGCg -3'
miRNA:   3'- cccGCACCAcGGGCu----GGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 155157 0.72 0.213844
Target:  5'- cGGCGUcgccgccGUGCCCGGCCCUcgcgGCCCcgGCCc -3'
miRNA:   3'- cCCGCAc------CACGGGCUGGGG----CGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 29649 0.72 0.213844
Target:  5'- cGGCGUcgccgccGUGCCCGGCCCUcgcgGCCCcgGCCc -3'
miRNA:   3'- cCCGCAc------CACGGGCUGGGG----CGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 34351 0.72 0.213844
Target:  5'- --cCGUGGUcCCCGuggccCCCCGCCCGCg -3'
miRNA:   3'- cccGCACCAcGGGCu----GGGGCGGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.