miRNA display CGI


Results 61 - 80 of 686 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 154729 0.66 0.506579
Target:  5'- cGGGCG-GG-GCCCGGg--CGCCCggGCCa -3'
miRNA:   3'- -CCCGCaCCaCGGGCUgggGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 58784 0.66 0.506579
Target:  5'- aGGGCGcGGUGggcuuuccgggcCCCGGCUCUuccgaGCCC-CCa -3'
miRNA:   3'- -CCCGCaCCAC------------GGGCUGGGG-----CGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 65200 0.66 0.506579
Target:  5'- gGGGCGcaUGGaGgCCGACgaCGCCUGCg -3'
miRNA:   3'- -CCCGC--ACCaCgGGCUGggGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 32571 0.66 0.506579
Target:  5'- uGGcCGcGGcGCCgCGG-CCCGCCCGCg -3'
miRNA:   3'- cCC-GCaCCaCGG-GCUgGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 42762 0.66 0.503901
Target:  5'- cGGGCGUgaccucuuuGGUG-CUGGCCgugggugacguagaCCGCCUGUCu -3'
miRNA:   3'- -CCCGCA---------CCACgGGCUGG--------------GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 90007 0.66 0.503901
Target:  5'- uGGGCGUGGagcgGCCCGcgggccggcgaucgACgcgcagCCGCUCGUCc -3'
miRNA:   3'- -CCCGCACCa---CGGGC--------------UGg-----GGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 119767 0.66 0.503009
Target:  5'- cGGGCccugcccccuGUGCCCGggggccuGCCCCggggucuGCCUGCCg -3'
miRNA:   3'- -CCCGcac-------CACGGGC-------UGGGG-------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 48889 0.66 0.498563
Target:  5'- cGGGCGgccgcuacagcgcggGGUGCUCGcggGCCaCGCCgugguCGCCa -3'
miRNA:   3'- -CCCGCa--------------CCACGGGC---UGGgGCGG-----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 3799 0.66 0.497675
Target:  5'- cGGCGgcgacGGcgGCCuCGGCgCCGCCgGCg -3'
miRNA:   3'- cCCGCa----CCa-CGG-GCUGgGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 26054 0.66 0.497675
Target:  5'- gGGGCGcGGcGCCCucgcgcGCCCCcgGCCCGg- -3'
miRNA:   3'- -CCCGCaCCaCGGGc-----UGGGG--CGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 2906 0.66 0.497675
Target:  5'- uGGGUGgaccgcccgGGggaGCCCG-CCCCGUCCucgGUCa -3'
miRNA:   3'- -CCCGCa--------CCa--CGGGCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 138102 0.66 0.497675
Target:  5'- uGGCGggaugGGgucuccgGCUCGACgCCCcUCCGCCc -3'
miRNA:   3'- cCCGCa----CCa------CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 88986 0.66 0.497675
Target:  5'- aGGCGcUGccGUGCCUGGCCgCGgaccaCCCGCUu -3'
miRNA:   3'- cCCGC-AC--CACGGGCUGGgGC-----GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18817 0.66 0.497675
Target:  5'- gGGGCG-GGUGUgCGGCgggcggcgguUgCGCgCCGCCc -3'
miRNA:   3'- -CCCGCaCCACGgGCUG----------GgGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 56527 0.66 0.497675
Target:  5'- cGGGgG-GGacgacgaGcCCCGACCCCaCCgCGCCa -3'
miRNA:   3'- -CCCgCaCCa------C-GGGCUGGGGcGG-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 142841 0.66 0.497675
Target:  5'- uGGCGUucacccugugccGGUcgacccgaaggGCCCagaGCCCCGCCuaCGCCg -3'
miRNA:   3'- cCCGCA------------CCA-----------CGGGc--UGGGGCGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 33807 0.66 0.497675
Target:  5'- uGGGUGgaccgcccgGGggaGCCCG-CCCCGUCCucgGUCa -3'
miRNA:   3'- -CCCGCa--------CCa--CGGGCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 129307 0.66 0.497675
Target:  5'- cGGCGgcgacGGcgGCCuCGGCgCCGCCgGCg -3'
miRNA:   3'- cCCGCa----CCa-CGG-GCUGgGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 151563 0.66 0.497675
Target:  5'- gGGGCGcGGcGCCCucgcgcGCCCCcgGCCCGg- -3'
miRNA:   3'- -CCCGCaCCaCGGGc-----UGGGG--CGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 61266 0.66 0.497675
Target:  5'- gGGGCGgggaggggggGGUGCUgUGGaaCCGCCCGUUg -3'
miRNA:   3'- -CCCGCa---------CCACGG-GCUggGGCGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.