miRNA display CGI


Results 81 - 100 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 33807 0.66 0.497675
Target:  5'- uGGGUGgaccgcccgGGggaGCCCG-CCCCGUCCucgGUCa -3'
miRNA:   3'- -CCCGCa--------CCa--CGGGCuGGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 3799 0.66 0.497675
Target:  5'- cGGCGgcgacGGcgGCCuCGGCgCCGCCgGCg -3'
miRNA:   3'- cCCGCa----CCa-CGG-GCUGgGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 138102 0.66 0.497675
Target:  5'- uGGCGggaugGGgucuccgGCUCGACgCCCcUCCGCCc -3'
miRNA:   3'- cCCGCa----CCa------CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 18817 0.66 0.497675
Target:  5'- gGGGCG-GGUGUgCGGCgggcggcgguUgCGCgCCGCCc -3'
miRNA:   3'- -CCCGCaCCACGgGCUG----------GgGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 126662 0.66 0.496789
Target:  5'- cGGCGgcgcgaGCCCGGCCCCccgcucccucgucGCCguCGCCg -3'
miRNA:   3'- cCCGCacca--CGGGCUGGGG-------------CGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 60257 0.66 0.496789
Target:  5'- cGGCGcucgaagccccccUGGgccGCCuuucCGGCCCCGCCgucgCGCCc -3'
miRNA:   3'- cCCGC-------------ACCa--CGG----GCUGGGGCGG----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 58358 0.66 0.496789
Target:  5'- -cGCG-GGU-CCCGGCCuccagggCCGCgCCGCCc -3'
miRNA:   3'- ccCGCaCCAcGGGCUGG-------GGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 1153 0.66 0.496789
Target:  5'- cGGCGgcgcgaGCCCGGCCCCccgcucccucgucGCCguCGCCg -3'
miRNA:   3'- cCCGCacca--CGGGCUGGGG-------------CGG--GCGG- -5'
21519 5' -66.1 NC_004812.1 + 95560 0.66 0.495018
Target:  5'- cGGCGgGGUcgagcgggcuaaccGCaCGGCCgCGCCCGCg -3'
miRNA:   3'- cCCGCaCCA--------------CGgGCUGGgGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 28536 0.66 0.494134
Target:  5'- cGGCGgcagcgagcgGCCCGACCUCGggCGCCg -3'
miRNA:   3'- cCCGCacca------CGGGCUGGGGCggGCGG- -5'
21519 5' -66.1 NC_004812.1 + 65109 0.66 0.488843
Target:  5'- aGGaGUGGcugGCgCGGCCCCuGCCgGUCg -3'
miRNA:   3'- cCCgCACCa--CGgGCUGGGG-CGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 133211 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 41252 0.66 0.488843
Target:  5'- --cUGUcGGcGCCgCGuCCCCGCCCGCg -3'
miRNA:   3'- cccGCA-CCaCGG-GCuGGGGCGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 7703 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 86022 0.66 0.488843
Target:  5'- gGGGCGUGGgcggucaggaacUGCUauuaGagugacucaGCCCCagGCCCGCUu -3'
miRNA:   3'- -CCCGCACC------------ACGGg---C---------UGGGG--CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 15063 0.66 0.488843
Target:  5'- aGGCGgacUGGcgGCgacaCGuCgCCGCCCGCCg -3'
miRNA:   3'- cCCGC---ACCa-CGg---GCuGgGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138378 0.66 0.488843
Target:  5'- cGGGCG-GGgGCgCGuACgCCGCCCgggugGCCu -3'
miRNA:   3'- -CCCGCaCCaCGgGC-UGgGGCGGG-----CGG- -5'
21519 5' -66.1 NC_004812.1 + 100676 0.66 0.488843
Target:  5'- cGGCGUcGG-GCCCGGCgCUCGCgCGg- -3'
miRNA:   3'- cCCGCA-CCaCGGGCUG-GGGCGgGCgg -5'
21519 5' -66.1 NC_004812.1 + 130723 0.66 0.488843
Target:  5'- uGGGCGcgGGcGCCgCGGagggCCGgCCGCCg -3'
miRNA:   3'- -CCCGCa-CCaCGG-GCUgg--GGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 150111 0.66 0.488843
Target:  5'- ---gGUGGUGUCCGcgGCCCC-CCCuuGCCu -3'
miRNA:   3'- cccgCACCACGGGC--UGGGGcGGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.