miRNA display CGI


Results 41 - 60 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 3961 0.66 0.51555
Target:  5'- -----cGGagGCCCGGCgCCCcCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CGGGCUG-GGGcGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 4199 0.71 0.255756
Target:  5'- aGGGCGcccccgcGGcGCCCGGCCCCaCgCGCUa -3'
miRNA:   3'- -CCCGCa------CCaCGGGCUGGGGcGgGCGG- -5'
21519 5' -66.1 NC_004812.1 + 4394 0.67 0.44585
Target:  5'- aGGCGUcgcccgGGUGguCCCGccGCaCUCGCCUGCCc -3'
miRNA:   3'- cCCGCA------CCAC--GGGC--UG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 4442 0.68 0.413024
Target:  5'- cGGGCcgcGUGuccccGCCCGAguaccccggcgaCCCCGCCCacgGCCu -3'
miRNA:   3'- -CCCG---CACca---CGGGCU------------GGGGCGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 4640 0.67 0.462801
Target:  5'- gGGGCG-GGacGCCCGcgcggggaggGgCUCGCCgGCCg -3'
miRNA:   3'- -CCCGCaCCa-CGGGC----------UgGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 4641 0.68 0.389405
Target:  5'- cGGGCGcGGgcgcGCCggCGGCCUCGUagCGCCg -3'
miRNA:   3'- -CCCGCaCCa---CGG--GCUGGGGCGg-GCGG- -5'
21519 5' -66.1 NC_004812.1 + 4726 0.7 0.291439
Target:  5'- gGGGCGU-GUGCCCG--CUCGCCCGg- -3'
miRNA:   3'- -CCCGCAcCACGGGCugGGGCGGGCgg -5'
21519 5' -66.1 NC_004812.1 + 4752 0.71 0.273131
Target:  5'- gGGGCGgcggcucGGcGCCgGGCCaCgGCUCGCCg -3'
miRNA:   3'- -CCCGCa------CCaCGGgCUGG-GgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 4808 0.7 0.310693
Target:  5'- cGGGCGUagaaGGcGCCCGagGCCUCGUCgGCg -3'
miRNA:   3'- -CCCGCA----CCaCGGGC--UGGGGCGGgCGg -5'
21519 5' -66.1 NC_004812.1 + 4812 0.73 0.204331
Target:  5'- cGGGCGcgGGgucgGCaCgCGGCCCCGaCCCaGCCc -3'
miRNA:   3'- -CCCGCa-CCa---CG-G-GCUGGGGC-GGG-CGG- -5'
21519 5' -66.1 NC_004812.1 + 4884 0.67 0.417853
Target:  5'- uGGCGUcGcGCCCGGCCacggcggcgcgcgCGCgCCGCCg -3'
miRNA:   3'- cCCGCAcCaCGGGCUGGg------------GCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 5057 0.74 0.158351
Target:  5'- aGGGCGccGcGCCCccGGCCCCGgcCCCGCCg -3'
miRNA:   3'- -CCCGCacCaCGGG--CUGGGGC--GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 5253 0.67 0.44585
Target:  5'- gGGGCGcgccgagucGGccGCCgCGGCCCCGCgCUcgGCCg -3'
miRNA:   3'- -CCCGCa--------CCa-CGG-GCUGGGGCG-GG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 5791 0.69 0.324059
Target:  5'- cGGCGUuccucCUCGACCCCGCuCCGUCg -3'
miRNA:   3'- cCCGCAccac-GGGCUGGGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 5877 0.7 0.297751
Target:  5'- -cGCGcGGUcGCCgGccucauauACCCCGUCCGCCg -3'
miRNA:   3'- ccCGCaCCA-CGGgC--------UGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 6012 0.68 0.381731
Target:  5'- cGGcGCGcGGcgGCgCCG-CCCCgucgaggaGCCCGCCg -3'
miRNA:   3'- -CC-CGCaCCa-CG-GGCuGGGG--------CGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 6201 0.7 0.279129
Target:  5'- gGGGCGcccGGcgGCCCgcgGACgCCGCCCcuGCCg -3'
miRNA:   3'- -CCCGCa--CCa-CGGG---CUGgGGCGGG--CGG- -5'
21519 5' -66.1 NC_004812.1 + 7559 0.69 0.330901
Target:  5'- cGGGCGcgGGgggcgGUCCcGCCCC-CaCCGCCg -3'
miRNA:   3'- -CCCGCa-CCa----CGGGcUGGGGcG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 7601 0.67 0.421091
Target:  5'- cGGCGcc--GCCgCG-CCCgGCCCGCCg -3'
miRNA:   3'- cCCGCaccaCGG-GCuGGGgCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 7703 0.66 0.488843
Target:  5'- cGGaCGcccGUcGCCgGACgCUCGCCCGCCg -3'
miRNA:   3'- cCC-GCac-CA-CGGgCUG-GGGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.